Evidence map›Paper›PMID 32255775›Full record

ArticlePLoS computational biology2020

Mechanistic models of PLC/PKC signaling implicate phosphatidic acid as a key amplifier of chemotactic gradient sensing.

Jamie L Nosbisch, Anisur Rahman, Krithika Mohan, Timothy C Elston, James E Bear, Jason M Haugh

Open access · goldAbstract read
In one paragraph

Article in PLoS computational biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.4field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 8 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Jamie L NosbischBiomathematics Graduate Program, North Carolina State University, Raleigh, North Carolina, United States of America.ORCID 0000-0001-9677-9765
Anisur RahmanDepartment of Chemical and Biomolecular Engineering, North Carolina State University, Raleigh, North Carolina, United States of America.ORCID 0000-0002-5203-8188
Krithika MohanDepartment of Chemical and Biomolecular Engineering, North Carolina State University, Raleigh, North Carolina, United States of America.
Timothy C ElstonDepartment of Pharmacology, University of North Carolina School of Medicine, Chapel Hill, North Carolina, United States of America.ORCID 0000-0002-4601-2117
James E BearDepartment of Cell Biology and Physiology, UNC Lineberger Comprehensive Cancer Center, University of North Carolina School of Medicine, Chapel Hill, North Carolina, United States of America.
Jason M HaughDepartment of Chemical and Biomolecular Engineering, North Carolina State University, Raleigh, North Carolina, United States of America.ORCID 0000-0002-2476-4027
North Carolina State University · USUniversity of North Carolina at Chapel Hill · US

Funding

Virology Research Program (Program 4)P30CA016086 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI David Darr · 1985 to 2026
$201.5M
Multiscale Modeling of Wound HealingU01EB018816 · NIBIB · NORTH CAROLINA STATE UNIVERSITY RALEIGH · PI HAUGH, JASON M. · 2014 to 2021
$4.0M
The Virtual Cell: a Computational Resource for Collaborative Modeling and Simulation of Cell BiologyR24GM134211 · NIGMS · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI LOEW, LESLIE M · 2019 to 2019
$528k
NCI NIH HHS P30 CA016086NIBIB NIH HHS U01 EB018816NIGMS NIH HHS R24 GM134211
6 · The paper itself

Abstract

Chemotaxis of fibroblasts and other mesenchymal cells is critical for embryonic development and wound healing. Fibroblast chemotaxis directed by a gradient of platelet-derived growth factor (PDGF) requires signaling through the phospholipase C (PLC)/protein kinase C (PKC) pathway. Diacylglycerol (DAG), the lipid product of PLC that activates conventional PKCs, is focally enriched at the up-gradient leading edge of fibroblasts responding to a shallow gradient of PDGF, signifying polarization. To explain the underlying mechanisms, we formulated reaction-diffusion models including as many as three putative feedback loops based on known biochemistry. These include the previously analyzed mechanism of substrate-buffering by myristoylated alanine-rich C kinase substrate (MARCKS) and two newly considered feedback loops involving the lipid, phosphatidic acid (PA). DAG kinases and phospholipase D, the enzymes that produce PA, are identified as key regulators in the models. Paradoxically, increasing DAG kinase activity can enhance the robustness of DAG/active PKC polarization with respect to chemoattractant concentration while decreasing their whole-cell levels. Finally, in simulations of wound invasion, efficient collective migration is achieved with thresholds for chemotaxis matching those of polarization in the reaction-diffusion models. This multi-scale modeling framework offers testable predictions to guide further study of signal transduction and cell behavior that affect mesenchymal chemotaxis.

Indexed as

AnimalsChemotaxisDiglyceridesFibroblastsHumansIntracellular Signaling Peptides and ProteinsMembrane ProteinsModels, TheoreticalMyristoylated Alanine-Rich C Kinase SubstratePhosphatidic AcidsPhospholipase DPhosphorylationPlatelet-Derived Growth FactorProtein Kinase CSignal TransductionType C PhospholipasesDiglyceridesIntracellular Signaling Peptides and ProteinsMembrane ProteinsMyristoylated Alanine-Rich C Kinase SubstratePhosphatidic AcidsPhospholipase DPlatelet-Derived Growth FactorProtein Kinase CType C Phospholipases

Identifiers

PMID32255775
PMCPMC7164671
OpenAlexW3014236556

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.