Evidence map›Paper›PMID 32255732›Full record

ArticleEpigenetics2020

Enrichment of CpG island shore region hypermethylation in epigenetic breast field cancerization.

Meghan E Muse, Alexander J Titus, Lucas A Salas, Owen M Wilkins, Chelsey Mullen, Kelly J Gregory, Sallie S Schneider, Giovanna M Crisi, Rahul M Jawale, Christopher N Otis and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Epigenetics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
4.9field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 45 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Application of Novel Breast Biospecimen Cell-Type Adjustment Identifies Shared DNA Methylation Alterations in Breast Tissue and Milk with Breast Cancer-Risk Factors.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2023
    Article
  10. Article
  11. Article
  12. Field cancerization in breast cancer.The Journal of pathology · 2022
    Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Epigenetic modifications and the development of kidney graft fibrosis.Current opinion in organ transplantation · 2021
    Review
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 1 country.

Meghan E MuseDepartment of Epidemiology, Dartmouth Geisel School of Medicine , Hanover, NH, USA.ORCID 0000-0002-4775-2133
Alexander J TitusDepartment of Epidemiology, Dartmouth Geisel School of Medicine , Hanover, NH, USA.
Lucas A SalasDepartment of Epidemiology, Dartmouth Geisel School of Medicine , Hanover, NH, USA.ORCID 0000-0002-2279-4097
Owen M WilkinsDepartment of Epidemiology, Dartmouth Geisel School of Medicine , Hanover, NH, USA.ORCID 0000-0002-0882-9484
Chelsey MullenDepartment of Veterinary & Animal Sciences, University of Massachusetts , Amherst, MA, USA.
Kelly J GregoryPioneer Valley Life Sciences Institute , Baystate Medical Center, Springfield, MA, USA.
Sallie S SchneiderDepartment of Veterinary & Animal Sciences, University of Massachusetts , Amherst, MA, USA.
Giovanna M CrisiDepartment of Pathology, University of Massachusetts Medical School-Baystate Health , Springfield, MA, USA.
Rahul M JawaleDepartment of Pathology, University of Massachusetts Medical School-Baystate Health , Springfield, MA, USA.
Christopher N OtisDepartment of Pathology, University of Massachusetts Medical School-Baystate Health , Springfield, MA, USA.
Brock C ChristensenDepartment of Epidemiology, Dartmouth Geisel School of Medicine , Hanover, NH, USA.ORCID 0000-0003-3022-426X
Kathleen F ArcaroDepartment of Veterinary & Animal Sciences, University of Massachusetts , Amherst, MA, USA.
Dartmouth College · USUniversity of Massachusetts Chan Medical School · USBaystate Medical Center · USUniversity of Massachusetts Amherst · US

Funding

Relation Between In-utero Vitamin D and Immune Function in Early Childhood P20GM104416 · NIGMS · DARTMOUTH COLLEGE · PI CHRISTENSEN, BROCK CLARKE · 2013 to 2022
$23.7M
Fruit and vegetable intervention in lactating women to reduce breast cancer risk: effects on breast cell DNA methylation, breast inflammation, and weightR01CA230478 · NCI · UNIVERSITY OF MASSACHUSETTS AMHERST · PI ARCARO, KATHLEEN FRANCES, SIBEKO, LINDIWE N · 2019 to 2023
$3.2M
(PQ3) Immune epigenetic biomarkers of bladder cancer outcomesR01CA216265 · NCI · DARTMOUTH COLLEGE · PI CHRISTENSEN, BROCK CLARKE · 2017 to 2021
$2.9M
Quantitative Biomedical Sciences at DartmouthT32LM012204 · NLM · DARTMOUTH COLLEGE · PI TOSTESON, TOR D · 2016 to 2020
$876k
NCI NIH HHS R01 CA216265NCI NIH HHS R01 CA230478NIGMS NIH HHS P20 GM104416NLM NIH HHS T32 LM012204Wellcome Trust
6 · The paper itself

Abstract

While changes in DNA methylation are known to occur early in breast carcinogenesis and the landscape of breast tumour DNA methylation is profoundly altered compared with normal tissue, there have been limited efforts to identify DNA methylation field cancerization effects in histologically normal breast tissue adjacent to tumour. Matched tumour, histologically normal tissue of the ipsilateral breast (ipsilateral-normal), and histologically normal tissue of the contralateral breast (contralateral-normal) were obtained from nine women undergoing bilateral mastectomy. Laser capture microdissection was used to select epithelial cells from normal tissue, and neoplastic cells from tumour for genome-scale measures of DNA methylation with the Illumina HumanMethylationEPIC array. We identified substantially more CpG loci that were differentially methylated between contralateral-normal and tumour (63,271 CpG loci ABBREVIATIONS: DCIS: ductal carcinoma

Indexed as

CpG IslandsDNA MethylationEpigenesis, GeneticBreast NeoplasmsCarcinogenesisEstrogen Receptor alphaFemaleGATA3 Transcription FactorHepatocyte Nuclear Factor 3-alphaHumansPromoter Regions, GeneticESR1 protein, humanEstrogen Receptor alphaFOXA1 protein, humanGATA3 protein, humanGATA3 Transcription FactorHepatocyte Nuclear Factor 3-alphabreast cancercontralateral breastDNA methylationepigeneticsField cancerizationnormal breast

Identifiers

PMID32255732
PMCPMC7518670
OpenAlexW3014550703

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.