Evidence map›Paper›PMID 32251432›Full record

ArticlePLoS computational biology2020

Robustness of the Dorsal morphogen gradient with respect to morphogen dosage.

Hadel Al Asafen, Prasad U Bandodkar, Sophia Carrell-Noel, Allison E Schloop, Jeramey Friedman, Gregory T Reeves

Open access · goldAbstract read
In one paragraph

Article in PLoS computational biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.6field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Article
  3. Precise and scalable self-organization in mammalian pseudo-embryos.Nature structural & molecular biology · 2024
    Article
  4. Article
  5. Article
  6. Article
  7. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Hadel Al AsafenDepartment of Chemical and Biomolecular Engineering, North Carolina State University, Raleigh, North Carolina, United States of America.
Prasad U BandodkarDepartment of Chemical and Biomolecular Engineering, North Carolina State University, Raleigh, North Carolina, United States of America.ORCID 0000-0002-4955-144X
Sophia Carrell-NoelDepartment of Chemical and Biomolecular Engineering, North Carolina State University, Raleigh, North Carolina, United States of America.ORCID 0000-0003-0737-6257
Allison E SchloopGenetics Program, North Carolina State University, Raleigh, North Carolina, United States of America.ORCID 0000-0002-2624-9184
Jeramey FriedmanDepartment of Chemical and Biomolecular Engineering, North Carolina State University, Raleigh, North Carolina, United States of America.
Gregory T ReevesDepartment of Chemical and Biomolecular Engineering, North Carolina State University, Raleigh, North Carolina, United States of America.
North Carolina State University · US

Funding

The role of feedforward loops in regulating the dynamics of cell-cell signalingR21HD092830 · NICHD · TEXAS ENGINEERING EXPERIMENT STATION · PI REEVES, GREGORY T · 2017 to 2018
$379k
NICHD NIH HHS R21 HD092830
6 · The paper itself

Abstract

In multicellular organisms, the timing and placement of gene expression in a developing tissue assigns the fate of each cell in the embryo in order for a uniform field of cells to differentiate into a reproducible pattern of organs and tissues. This positional information is often achieved through the action of spatial gradients of morphogens. Spatial patterns of gene expression are paradoxically robust to variations in morphogen dosage, given that, by definition, gene expression must be sensitive to morphogen concentration. In this work we investigate the robustness of the Dorsal/NF-κB signaling module with respect to perturbations to the dosage of maternally-expressed dorsal mRNA. The Dorsal morphogen gradient patterns the dorsal-ventral axis of the early Drosophila embryo, and we found that an empirical description of the Dorsal gradient is highly sensitive to maternal dorsal dosage. In contrast, we found experimentally that gene expression patterns are highly robust. Although the components of this signaling module have been characterized in detail, how their function is integrated to produce robust gene expression patterns to variations in the dorsal maternal dosage is still unclear. Therefore, we analyzed a mechanistic model of the Dorsal signaling module and found that Cactus, a cytoplasmic inhibitor for Dorsal, must be present in the nucleus for the system to be robust. Furthermore, active Toll, the receptor that dissociates Cactus from Dorsal, must be saturated. Finally, the vast majority of robust descriptions of the system require facilitated diffusion of Dorsal by Cactus. Each of these three recently-discovered mechanisms of the Dorsal module are critical for robustness. These mechanisms synergistically contribute to changing the amplitude and shape of the active Dorsal gradient, which is required for robust gene expression. Our work highlights the need for quantitative understanding of biophysical mechanisms of morphogen gradients in order to understand emergent phenotypes, such as robustness.

Indexed as

AnimalsBody PatterningCell NucleusCytoplasmDNA-Binding ProteinsDrosophilaDrosophila ProteinsEmbryo, NonmammalianGene Expression Regulation, DevelopmentalMorphogenesisNF-kappa BNuclear ProteinsPhosphoproteinsSignal TransductionTranscription Factorscact protein, Drosophiladl protein, DrosophilaDNA-Binding ProteinsDrosophila ProteinsNF-kappa BNuclear ProteinsPhosphoproteinsTranscription Factors

Identifiers

PMID32251432
PMCPMC7162545
OpenAlexW3014984286

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.