Evidence map›Paper›PMID 32251410›Full record

ArticleNature chemical biology2020

Discovery of a selective inhibitor of doublecortin like kinase 1.

Fleur M Ferguson, Behnam Nabet, Srivatsan Raghavan, Yan Liu, Alan L Leggett, Miljan Kuljanin, Radha L Kalekar, Annan Yang, Shuning He, Jinhua Wang and 27 more

Open access · greenAbstract read
In one paragraph

Article in Nature chemical biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 60 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
60citing papers in PubMed, 1 pooled it
8.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

60 citing papers in PubMed, 1 synthesis or guideline pooled it, 113 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

37 authors at 12 institutions in 3 countries.

Fleur M Ferguson *Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA, USA.ORCID http://orcid.org/0000-0003-4091-7617
Behnam Nabet *Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA, USA.ORCID http://orcid.org/0000-0002-6738-4200
Srivatsan RaghavanDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.
Yan LiuDepartments of Biochemistry and Radiation Oncology, the University of Texas Southwestern Medical Center, Dallas, TX, USA.
Alan L LeggettDepartment of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA, USA.
Miljan KuljaninDivision of Radiation and Genome Stability, Department of Radiation Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.
Radha L KalekarDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.
Annan YangDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.ORCID http://orcid.org/0000-0002-6750-0304
Shuning HeDepartment of Pediatric Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.
Jinhua WangDepartment of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA, USA.ORCID http://orcid.org/0000-0002-1214-4103
Raymond W S NgDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.
Rita SulahianBroad Institute of MIT and Harvard, Cambridge, MA, USA.
Lianbo LiDepartments of Biochemistry and Radiation Oncology, the University of Texas Southwestern Medical Center, Dallas, TX, USA.ORCID http://orcid.org/0000-0003-0107-7125
Emily J PoulinCancer Research Institute and Department of Medicine, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA, USA.
Ling HuangCancer Research Institute and Department of Medicine, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA, USA.
Jost KorenDepartment of Molecular and Human Genetics, Therapeutic Innovation Center Verna and Marrs McLean Department of Biochemistry and Molecular Biology, Baylor College of Medicine, Houston, TX, USA.
Nora Dieguez-MartinezDepartament de Bioquímica i Biologia Molecular & Institut de Neurociencies, Facultat de Medicina. Universitat Autonoma de Barcelona, Bellaterra, Spain.
Sergio EspinosaDepartament de Bioquímica i Biologia Molecular & Institut de Neurociencies, Facultat de Medicina. Universitat Autonoma de Barcelona, Bellaterra, Spain.
Zhiyang ZengPromega Corporation, Madison, WI, USA.
Cesear R CoronaPromega Corporation, Madison, WI, USA.
James D VastaPromega Corporation, Madison, WI, USA.
Ryoma OhiDepartment of Cell and Developmental Biology, University of Michigan Medical School, Ann Arbor, MI, USA.
Taebo SimChemical Kinomics Research Center, Korea Institute of Science and Technology (KIST), Seoul, Republic of Korea and KU-KIST Graduate School of Converging Science and Technology, Korea University, Seoul, Republic of Korea.
Nam Doo KimNDBio Therapeutics Inc, Incheon, Republic of Korea.
Wayne HarshbargerBroad Institute of MIT and Harvard, Cambridge, MA, USA.
Jose M LizcanoDepartament de Bioquímica i Biologia Molecular & Institut de Neurociencies, Facultat de Medicina. Universitat Autonoma de Barcelona, Bellaterra, Spain.ORCID http://orcid.org/0000-0002-3154-5383
Matthew B RobersPromega Corporation, Madison, WI, USA.
Senthil MuthaswamyCancer Research Institute and Department of Medicine, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA, USA.
Charles Y LinDepartment of Molecular and Human Genetics, Therapeutic Innovation Center Verna and Marrs McLean Department of Biochemistry and Molecular Biology, Baylor College of Medicine, Houston, TX, USA.
A Thomas LookDepartment of Pediatric Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.
Kevin M HaigisCancer Research Institute and Department of Medicine, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA, USA.
Joseph D ManciasDivision of Radiation and Genome Stability, Department of Radiation Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.
Brian M WolpinDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.
Andrew J AguirreDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.ORCID http://orcid.org/0000-0002-0701-6203
William C HahnDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.ORCID http://orcid.org/0000-0003-2840-9791
Kenneth D WestoverDepartments of Biochemistry and Radiation Oncology, the University of Texas Southwestern Medical Center, Dallas, TX, USA.ORCID http://orcid.org/0000-0003-3653-5923
Nathanael S GrayDepartment of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA, USA. nathanael_gray@dfci.harvard.edu.ORCID http://orcid.org/0000-0001-5354-7403
Broad Institute · USBeth Israel Deaconess Medical Center · USDana-Farber Cancer Institute · USHarvard University · USPromega (United States) · USThe University of Texas Southwestern Medical Center · USUniversitat Autònoma de Barcelona · ESBaylor College of Medicine · USBoston Children's Hospital · USBrigham and Women's Hospital · USKorea University · KRUniversity of Michigan · US

Funding

Tissue and Pathology ResourcesP50CA127003 · NCI · DANA-FARBER CANCER INST · PI EL-BARDEESY, NABEEL, SELLERS, WILLIAM R · 2007 to 2023
$33.2M
STRUCTURE-FUNCTION RELATIONSHIPS IN THE ALIMENTARY TRACTP30DK034854 · NIDDK · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI LYNN BRY · 1986 to 2026
$32.4M
The Dana-Farber Cancer Institute Cancer Target Discovery and Development CenterU01CA176058 · NCI · DANA-FARBER CANCER INST · PI HAHN, WILLIAM C. · 2013 to 2021
$7.8M
Systematic identification of oncogenic KRAS synthetic lethal interactionsU01CA199253 · NCI · BROAD INSTITUTE, INC. · PI HAHN, WILLIAM C. · 2015 to 2019
$3.7M
Systematic interrogation of the pancreatic cancer microenvironment in patient-derived specimensU01CA224146 · NCI · DANA-FARBER CANCER INST · PI HAHN, WILLIAM C. · 2017 to 2021
$3.0M
Functional interrogation of epigenetic vulnerabilities in KRAS-mutant pancreatic cancerK08CA218420 · NCI · DANA-FARBER CANCER INST · PI AGUIRRE, ANDREW JAMES · 2017 to 2021
$886k
NCI NIH HHS K08 CA218420NCI NIH HHS P50 CA127003NCI NIH HHS U01 CA176058NCI NIH HHS U01 CA199253NCI NIH HHS U01 CA224146NIDDK NIH HHS P30 DK034854
6 · The paper itself

Abstract

Doublecortin like kinase 1 (DCLK1) is an understudied kinase that is upregulated in a wide range of cancers, including pancreatic ductal adenocarcinoma (PDAC). However, little is known about its potential as a therapeutic target. We used chemoproteomic profiling and structure-based design to develop a selective, in vivo-compatible chemical probe of the DCLK1 kinase domain, DCLK1-IN-1. We demonstrate activity of DCLK1-IN-1 against clinically relevant patient-derived PDAC organoid models and use a combination of RNA-sequencing, proteomics and phosphoproteomics analysis to reveal that DCLK1 inhibition modulates proteins and pathways associated with cell motility in this context. DCLK1-IN-1 will serve as a versatile tool to investigate DCLK1 biology and establish its role in cancer.

Indexed as

AnimalsCarcinoma, Pancreatic DuctalCell Line, TumorCell MovementDoublecortin-Like KinasesDoublecortin ProteinDrug Screening Assays, AntitumorGene Expression RegulationHumansIntracellular Signaling Peptides and ProteinsMaleMiceMolecular Docking SimulationMolecular StructurePancreatic NeoplasmsProtein Kinase InhibitorsDCLK1 protein, humanDcx protein, ratDoublecortin-Like KinasesDoublecortin ProteinIntracellular Signaling Peptides and ProteinsProtein Kinase InhibitorsProtein Serine-Threonine Kinases

Identifiers

PMID32251410
PMCPMC7246176
OpenAlexW3014346297

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.