Evidence map›Paper›PMID 32251399›Full record

ArticleNature cell biology2020

LSM2-8 and XRN-2 contribute to the silencing of H3K27me3-marked genes through targeted RNA decay.

Anna Mattout, Dimos Gaidatzis, Jan Padeken, Christoph D Schmid, Florian Aeschimann, Véronique Kalck, Susan M Gasser

Open access · greenAbstract read
In one paragraph

Article in Nature cell biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 36 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

Anna MattoutFriedrich Miescher Institute for Biomedical Research, Basel, Switzerland.
Dimos GaidatzisFriedrich Miescher Institute for Biomedical Research, Basel, Switzerland.
Jan PadekenFriedrich Miescher Institute for Biomedical Research, Basel, Switzerland.
Christoph D SchmidFriedrich Miescher Institute for Biomedical Research, Basel, Switzerland.
Florian AeschimannFriedrich Miescher Institute for Biomedical Research, Basel, Switzerland.
Véronique KalckFriedrich Miescher Institute for Biomedical Research, Basel, Switzerland.
Susan M GasserFriedrich Miescher Institute for Biomedical Research, Basel, Switzerland. susan.gasser@fmi.ch.ORCID http://orcid.org/0000-0003-3610-9123
Friedrich Miescher Institute · CHUniversity of Basel · CHCentre National de la Recherche Scientifique · FRSIB Swiss Institute of Bioinformatics · CH

Funding

Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Ann E. Rougvie · 2012 to 2026
$7.5M
European Research Council 743312NIH HHS P40 OD010440Swiss National Science Foundation 151381Swiss National Science Foundation 156936Swiss National Science Foundation 168717
6 · The paper itself

Abstract

In fission yeast and plants, RNA processing and degradation contribute to heterochromatin silencing, alongside conserved pathways of transcriptional repression. It has not been known whether similar pathways exist in metazoans. Here, we describe a pathway of silencing in Caenorhabditis elegans somatic cells, in which the highly conserved RNA-binding complex LSM2-8 contributes selectively to the repression of heterochromatic reporters and endogenous genes bearing the Polycomb mark, histone H3K27me3. This acts by degrading selected transcripts through the XRN-2 exoribonuclease. Disruption of the LSM2-8 pathway leads to mRNA stabilization. Unlike previously described pathways of heterochromatic RNA degradation, LSM2-8-mediated RNA degradation does not target nor require H3K9 methylation. Intriguingly, loss of this pathway coincides with a localized reduction in H3K27me3 at lsm-8-sensitive loci. We have thus uncovered a mechanism of RNA degradation that selectively contributes to the silencing of a subset of H3K27me3-marked genes, revealing a previously unrecognized layer of post-transcriptional control in metazoan heterochromatin.

Indexed as

AnimalsCaenorhabditis elegansCaenorhabditis elegans ProteinsExoribonucleasesGene SilencingHeterochromatinHistonesMethylationPolycomb-Group ProteinsRibonucleoproteins, Small NuclearRNA InterferenceRNA, MessengerRNA, Small InterferingRNA StabilityCaenorhabditis elegans ProteinsExoribonucleasesHeterochromatinHistonesPolycomb-Group ProteinsRibonucleoproteins, Small NuclearRNA, MessengerRNA, Small InterferingXRN-2 protein, C elegans

Identifiers

PMID32251399
PMCPMC7212045
OpenAlexW3014140793

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.