ArticleScientific reports2020
De novo transcriptome assembly and analysis of Phragmites karka, an invasive halophyte, to study the mechanism of salinity stress tolerance.
Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.
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13 citing papers in PubMed, 36 citations in OpenAlex.
- Ajay Kumar Parida (1963-2022), an eminent plant biotechnologist with a passion for mangrove biology.Physiology and molecular biology of plants : an international journal of functional plant biology · 2023Article
- Article
- Optimization and application of non-native Phragmites australis transcriptome assemblies.PloS one · 2023Article
- Potential use of saline resources for biofuel production using halophytes and marine algae: prospects and pitfalls.Frontiers in plant science · 2023Review
- Genes related to osmoregulation and antioxidation play important roles in the response ofFrontiers in plant science · 2023Article
- Salt Stress Tolerance inPlants (Basel, Switzerland) · 2022Article
- De novo transcriptome assembly, gene annotation, and EST-SSR marker development of an important medicinal and edible crop, Amomum tsaoko (Zingiberaceae).BMC plant biology · 2022Article
- Metabolomic Fingerprinting and Molecular Characterization of the Rock Samphire Germplasm Collection from the Balkan Botanic Garden of Kroussia, Northern Greece.Plants (Basel, Switzerland) · 2022Article
- Finger millet RNA-seq reveals differential gene expression associated with tolerance to aluminum toxicity and provides novel genomic resources.Frontiers in plant science · 2022Article
- Article
- Molecular cloning and characterization of GhERF105, a gene contributing to the regulation of gland formation in upland cotton (Gossypium hirsutum L.).BMC plant biology · 2021Article
- Transcriptome Analysis of Tetraploid and Octoploid Common Reed (Frontiers in plant science · 2021Article
- De-novo transcriptome analysis unveils differentially expressed genes regulating drought and salt stress response in Panicum sumatrense.Scientific reports · 2020Article
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Authors and funding
4 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
With the rapidly deteriorating environmental conditions, the development of stress tolerant plants has become a priority for sustaining agricultural productivity. Therefore, studying the process of stress tolerance in naturally tolerant species hold significant promise. Phragmites karka is an invasive plant species found abundantly in tropical and sub tropical regions, fresh water regions and brackish marshy areas, such as river banks and lake shores. The plant possesses the ability to adapt and survive under conditions of high salinity. We subjected P. karka seedlings to salt stress and carried out whole transcriptome profiling of leaf and root tissues. Assessing the global transcriptome changes under salt stress resulted in the identification of several genes that are differentially regulated under stress conditions in root and leaf tissue. A total of 161,403 unigenes were assembled and used as a reference for digital gene expression analysis. A number of key metabolic pathways were found to be over-represented. Digital gene expression analysis was validated using qRT-PCR. In addition, a number of different transcription factor families including WRKY, MYB, CCCH, NAC etc. were differentially expressed under salinity stress. Our data will facilitate further characterisation of genes involved in salinity stress tolerance in P. karka. The DEGs from our results are potential candidates for understanding and engineering abiotic stress tolerance in plants.
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