Evidence map›Paper›PMID 32251286›Full record

ArticleNature communications2020

8q24 genetic variation and comprehensive haplotypes altering familial risk of prostate cancer.

William D Dupont, Joan P Breyer, W Dale Plummer, Sam S Chang, Michael S Cookson, Joseph A Smith, University of Washington Center for Mendelian Genomics, Elizabeth E Blue, Michael J Bamshad, Jeffrey R Smith

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 20 citations in OpenAlex.

  1. Biomarkers in Localized Prostate Cancer: From Diagnosis to Treatment.International journal of molecular sciences · 2025
    Review
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  12. The promising role and prognostic value of miR-198 in human diseases.American journal of translational research · 2022
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 6 institutions in 1 country.

William D Dupont *Department of Biostatistics, Vanderbilt University Medical Center, 2525 West End Avenue, Nashville, TN, 37203, USA.
Joan P Breyer *Department of Medicine, Division of Genetic Medicine, Vanderbilt-Ingram Cancer Center, and Vanderbilt Genetics Institute, Vanderbilt University Medical Center, 507 Light Hall, 2215 Garland Avenue, Nashville, TN, 37232, USA.
W Dale PlummerDepartment of Biostatistics, Vanderbilt University Medical Center, 2525 West End Avenue, Nashville, TN, 37203, USA.
Sam S ChangDepartment of Urology, Vanderbilt University Medical Center, A-1302 Medical Center North, 1161 21st Avenue South, Nashville, TN, 37232, USA.
Michael S CooksonDepartment of Urology, University of Oklahoma Health Sciences Center, Suite 3150, 920 SL Young Boulevard, Oklahoma City, OK, 73104, USA.
Joseph A SmithDepartment of Urology, Vanderbilt University Medical Center, A-1302 Medical Center North, 1161 21st Avenue South, Nashville, TN, 37232, USA.
University of Washington Center for Mendelian Genomics
Elizabeth E BlueDepartment of Medicine, Division of Medical Genetics, University of Washington, HSB H132, Seattle, WA, 98195, USA.ORCID http://orcid.org/0000-0002-0633-0305
Michael J BamshadDepartment of Pediatrics, Division of Genetic Medicine, and Center for Mendelian Genomics, University of Washington, HSB RR349, 1959 NE Pacific Street, Seattle, WA, 98195, USA.
Jeffrey R SmithDepartment of Medicine, Division of Genetic Medicine, Vanderbilt-Ingram Cancer Center, and Vanderbilt Genetics Institute, Vanderbilt University Medical Center, 507 Light Hall, 2215 Garland Avenue, Nashville, TN, 37232, USA. jeffrey.smith@vumc.org.
University of Washington · USVanderbilt University Medical Center · USUniversity of Washington Medical Center · USVanderbilt University · USUniversity of Oklahoma Health Sciences Center · USVA Tennessee Valley Healthcare System · US

Funding

Tumor Immunology and Microenvironment Research ProgramP30CA068485 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI STACIE B DUSETZINA · 1995 to 2026
$172.8M
The Vanderbilt Institute for Clinical and Translational Research (VICTR)UL1TR000445 · NCATS · VANDERBILT UNIVERSITY MEDICAL CENTER · PI BERNARD, GORDON RAPHAEL · 2012 to 2016
$41.4M
UW Center for Mendelian GenomicsUM1HG006493 · NHGRI · UNIVERSITY OF WASHINGTON · PI BAMSHAD, MICHAEL JOSEPH, LEAL, SUZANNE M · 2016 to 2020
$15.3M
NHGRI Genome Sequencing Program Coordinating CenterU24HG008956 · NHGRI · RUTGERS, THE STATE UNIV OF N.J. · PI BUYSKE, STEVEN G, MATISE, TARA C. · 2016 to 2020
$4.9M
HiSeq X SequencerS10OD021553 · OD · UNIVERSITY OF WASHINGTON · PI NICKERSON, DEBORAH A · 2016 to 2016
$600k
BLRD VA I01 BX002502CSRD VA I01 CX002155NCATS NIH HHS UL1 TR000445NCI NIH HHS P30 CA068485NHGRI NIH HHS U24 HG008956NHGRI NIH HHS UM1 HG006493NIH HHS S10 OD021553
6 · The paper itself

Abstract

The 8q24 genomic locus is tied to the origin of numerous cancers. We investigate its contribution to hereditary prostate cancer (HPC) in independent study populations of the Nashville Familial Prostate Cancer Study and International Consortium for Prostate Cancer Genetics (combined: 2,836 HPC cases, 2,206 controls of European ancestry). Here we report 433 variants concordantly associated with HPC in both study populations, accounting for 9% of heritability and modifying age of diagnosis as well as aggressiveness; 183 reach genome-wide significance. The variants comprehensively distinguish independent risk-altering haplotypes overlapping the 648 kb locus (three protective, and four risk (peak odds ratios: 1.5, 4, 5, and 22)). Sequence of the near-Mendelian haplotype reveals eleven causal mutation candidates. We introduce a linkage disequilibrium-based algorithm discerning eight independent sentinel variants, carrying considerable risk prediction ability (AUC = 0.625) for a single locus. These findings elucidate 8q24 locus structure and correlates for clinical prediction of prostate cancer risk.

Indexed as

Genetic Predisposition to DiseaseAgedCase-Control StudiesChromosomes, Human, Pair 8Genetic LociGenome-Wide Association StudyHaplotypesHeterozygoteHumansLinkage DisequilibriumMaleMiddle AgedMutationProstatic NeoplasmsProtective FactorsRisk Factors

Identifiers

PMID32251286
PMCPMC7089954
OpenAlexW3012921302

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.