Evidence map›Paper›PMID 32251276›Full record

ArticleNature communications2020

CHD4 slides nucleosomes by decoupling entry- and exit-side DNA translocation.

Yichen Zhong, Bishnu P Paudel, Daniel P Ryan, Jason K K Low, Charlotte Franck, Karishma Patel, Max J Bedward, Mario Torrado, Richard J Payne, Antoine M van Oijen and 1 more

Open access · goldAbstract readVideo-Audio Media
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
4.2field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 66 citations in OpenAlex.

  1. Review
  2. Role of CHD chromatin remodelers in heart development.World journal of pediatrics : WJP · 2026
    Review
  3. Article
  4. Article
  5. Intrinsically Disordered Regions Define Unique Protein Interaction Networks in CHD Family Remodelers.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2025
    Article
  6. Article
  7. How does CHD4 slide nucleosomes?Biochemical Society transactions · 2024
    Review
  8. Review
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. TF-COMB - Discovering grammar of transcription factor binding sites.Computational and structural biotechnology journal · 2022
    Article
  17. Article
  18. Article
  19. Review
  20. Chromatin Remodeling in the Brain-aInternational journal of molecular sciences · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Yichen Zhong *School of Life and Environmental Sciences, University of Sydney, Sydney, NSW, 2006, Australia.
Bishnu P Paudel *Molecular Horizons, School of Chemistry and Molecular Bioscience, University of Wollongong, Wollongong, NSW, 2522, Australia.ORCID http://orcid.org/0000-0003-3518-3882
Daniel P RyanDepartment of Genome Sciences, The John Curtin School of Medical Research, The Australian National University, Canberra, ACT, 2601, Australia.
Jason K K LowSchool of Life and Environmental Sciences, University of Sydney, Sydney, NSW, 2006, Australia.
Charlotte FranckSchool of Life and Environmental Sciences, University of Sydney, Sydney, NSW, 2006, Australia.
Karishma PatelSchool of Life and Environmental Sciences, University of Sydney, Sydney, NSW, 2006, Australia.ORCID http://orcid.org/0000-0003-3034-3840
Max J BedwardSchool of Life and Environmental Sciences, University of Sydney, Sydney, NSW, 2006, Australia.
Mario TorradoSchool of Life and Environmental Sciences, University of Sydney, Sydney, NSW, 2006, Australia.
Richard J PayneSchool of Chemistry, The University of Sydney, Sydney, NSW, 2006, Australia.
Antoine M van OijenMolecular Horizons, School of Chemistry and Molecular Bioscience, University of Wollongong, Wollongong, NSW, 2522, Australia. vanoijen@uow.edu.au.ORCID http://orcid.org/0000-0002-1794-5161
Joel P MackaySchool of Life and Environmental Sciences, University of Sydney, Sydney, NSW, 2006, Australia. joel.mackay@sydney.edu.au.ORCID http://orcid.org/0000-0001-7508-8033
The University of Sydney · AUUniversity of Wollongong · AUAustralian National University · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Chromatin remodellers hydrolyse ATP to move nucleosomal DNA against histone octamers. The mechanism, however, is only partially resolved, and it is unclear if it is conserved among the four remodeller families. Here we use single-molecule assays to examine the mechanism of action of CHD4, which is part of the least well understood family. We demonstrate that the binding energy for CHD4-nucleosome complex formation-even in the absence of nucleotide-triggers significant conformational changes in DNA at the entry side, effectively priming the system for remodelling. During remodelling, flanking DNA enters the nucleosome in a continuous, gradual manner but exits in concerted 4-6 base-pair steps. This decoupling of entry- and exit-side translocation suggests that ATP-driven movement of entry-side DNA builds up strain inside the nucleosome that is subsequently released at the exit side by DNA expulsion. Based on our work and previous studies, we propose a mechanism for nucleosome sliding.

Indexed as

Chromatin Assembly and DisassemblyIntravital MicroscopyTranslocation, GeneticDNA-Binding ProteinsHEK293 CellsHistonesHumansMi-2 Nucleosome Remodeling and Deacetylase ComplexMicroscopy, FluorescenceNucleosomesProtein DomainsRecombinant ProteinsSaccharomyces cerevisiae ProteinsSingle Molecule ImagingCHD1 protein, S cerevisiaeCHD4 protein, humanDNA-Binding ProteinsHistonesMi-2 Nucleosome Remodeling and Deacetylase ComplexNucleosomesRecombinant ProteinsSaccharomyces cerevisiae Proteins

Identifiers

PMID32251276
PMCPMC7090039
OpenAlexW3012816053

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.