Evidence map›Paper›PMID 32250591›Full record

ArticleAnalytical chemistry2020

Covalent Labeling with an α,β-Unsaturated Carbonyl Scaffold for Studying Protein Structure and Interactions by Mass Spectrometry.

Bo Zhao, Jiaming Zhuang, Miaowei Xu, Tianying Liu, Patanachai Limpikirati, S Thayumanavan, Richard W Vachet

Abstract read
In one paragraph

Article in Analytical chemistry, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Bo Zhao
Jiaming Zhuang
Miaowei Xu
Tianying Liu
Patanachai LimpikiratiORCID 0000-0001-7708-4415

Funding

Copper-Induced Amyloidosis Studied by Mass SpectrometryR01GM075092 · NIGMS · UNIVERSITY OF MASSACHUSETTS AMHERST · PI VACHET, RICHARD W · 2005 to 2020
$4.0M
Protein-Induced Self-Assembly and Disassembly of Nanostructures Based on OligoR35GM136395 · NIGMS · UNIVERSITY OF MASSACHUSETTS AMHERST · PI Sankaran Thayumanavan · 2020 to 2026
$3.5M
Acquisition of an Orbitrap MSS10OD010645 · OD · UNIVERSITY OF MASSACHUSETTS AMHERST · PI EYLES, STEPHEN J. · 2013 to 2013
$600k
Templated Self-Assembly of Polymers Around ProteinsR01GM128181 · NIGMS · UNIVERSITY OF MASSACHUSETTS AMHERST · PI THAYUMANAVAN, SANKARAN · 2019 to 2020
$513k
NIGMS NIH HHS R01 GM075092NIGMS NIH HHS R01 GM128181NIGMS NIH HHS R35 GM136395NIH HHS S10 OD010645
6 · The paper itself

Abstract

A new covalent labeling (CL) reagent based on an α,β-unsaturated carbonyl scaffold has been developed for studying protein structure and protein-protein interactions when coupled with mass spectrometry. We show that this new reagent scaffold can react with up to 13 different types of residues on protein surfaces, thereby providing excellent structural resolution. To illustrate the value of this reagent scaffold, it is used to identify the residues involved in the protein-protein interface that is formed upon Zn(II) binding to the protein β-2-microglobulin. The modular design of the α,β-unsaturated carbonyl scaffold allows facile variation of the functional groups, enabling labeling kinetics and selectivity to be tuned. Moreover, by introducing isotopically enriched functional groups into the reagent structure, labeling sites can be more easily identified by MS and MS/MS. Overall, this reagent scaffold should be a valuable CL reagent for protein higher order structure characterization by MS.

Indexed as

Amino AcidsAnimalsbeta 2-MicroglobulinCarbonic AnhydrasesCattleHorsesHumansLactoglobulinsMass SpectrometryModels, MolecularMyoglobinProtein BindingProtein ConformationAmino Acidsbeta 2-MicroglobulinCarbonic AnhydrasesLactoglobulinsMyoglobin

Identifiers

PMID32250591
PMCPMC7207043

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.