Evidence map›Paper›PMID 32250538›Full record

ArticleThe FEBS journal2020

Pressure tolerance of deep-sea enzymes can be evolved through increasing volume changes in protein transitions: a study with lactate dehydrogenases from abyssal and hadal fishes.

Mackenzie E Gerringer, Paul H Yancey, Olga V Tikhonova, Nikita E Vavilov, Victor G Zgoda, Dmitri R Davydov

Open access · hybridAbstract read
In one paragraph

Article in The FEBS journal, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.4field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 19 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 2 countries.

Mackenzie E GerringerState University of New York at Geneseo, NY, USA.
Paul H YanceyBiology Department, Whitman College, Walla-Walla, WA, USA.
Olga V TikhonovaInstitute of Biomedical Chemistry, Moscow, Russia.
Nikita E VavilovInstitute of Biomedical Chemistry, Moscow, Russia.
Victor G ZgodaInstitute of Biomedical Chemistry, Moscow, Russia.
Dmitri R DavydovDepartment of Chemistry, Washington State University, Pullman, WA, USA.ORCID 0000-0001-8520-0033
Institute of Biomedical Chemistry · RUSUNY Geneseo · USWashington State University · USWhitman College · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We explore the principles of pressure tolerance in enzymes of deep-sea fishes using lactate dehydrogenases (LDH) as a case study. We compared the effects of pressure on the activities of LDH from hadal snailfishes Notoliparis kermadecensis and Pseudoliparis swirei with those from a shallow-adapted Liparis florae and an abyssal grenadier Coryphaenoides armatus. We then quantified the LDH content in muscle homogenates using mass-spectrometric determination of the LDH-specific conserved peptide LNLVQR. Existing theory suggests that adaptation to high pressure requires a decrease in volume changes in enzymatic catalysis. Accordingly, evolved pressure tolerance must be accompanied with an important reduction in the volume change associated with pressure-promoted alteration of enzymatic activity (

Indexed as

Adaptation, PhysiologicalPressureAmino Acid SequenceAnimalsFishesFish ProteinsLactate DehydrogenasesMuscle ProteinsMusclesSequence HomologyFish ProteinsLactate DehydrogenasesMuscle Proteinshigh-pressure adaptationhydrostatic pressurelactate dehydrogenaseLiparidaeMacrouridaepressure-tolerant enzymes

Identifiers

PMID32250538
PMCPMC7818408
OpenAlexW3015151106

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.