Evidence map›Paper›PMID 32249506›Full record

ArticleSmall (Weinheim an der Bergstrasse, Germany)2020

A Förster Resonance Energy Transfer-Based Ratiometric Sensor with the Allosteric Transcription Factor TetR.

Thuy T Nguyen, Margaret Chern, R C Baer, James Galagan, Allison M Dennis

Open access · greenAbstract read
In one paragraph

Article in Small (Weinheim an der Bergstrasse, Germany), 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 23 citations in OpenAlex.

  1. Review
  2. The quantum dotChemical science · 2022
    Article
  3. Article
  4. Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Thuy T NguyenDepartment of Biomedical Engineering, Boston University, Boston, MA, 02215, USA.
Margaret ChernDivision of Materials Science and Engineering, Boston University, Boston, MA, 02215, USA.ORCID 0000-0003-3993-5500
R C BaerDepartment of Microbiology, Boston University, Boston, MA, 02218, USA.
James GalaganDepartment of Biomedical Engineering, Boston University, Boston, MA, 02215, USA.ORCID 0000-0003-0542-3291
Allison M DennisDepartment of Biomedical Engineering, Boston University, Boston, MA, 02215, USA.ORCID 0000-0001-5759-9905
Boston University · US

Funding

Institutional Career DevelopmentKL2TR001411 · NCATS · BOSTON UNIVERSITY MEDICAL CAMPUS · PI MORONE, NATALIA E. · 2015 to 2024
$5.9M
Multiplexed Imaging in the Near Infrared with Indium Phosphide Quantum ShellsR01GM129437 · NIGMS · NORTHEASTERN UNIVERSITY · PI DENNIS, ALLISON MARIE · 2019 to 2022
$2.1M
Acquisition of Octet Biolayer Interferometry system for MIT biophysics facilityS10OD016326 · OD · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI IMPERIALI, BARBARA · 2014 to 2014
$180k
NCATS NIH HHS KL2 TR001411NIGMS NIH HHS R01 GM129437NIH HHS S10 OD016326
6 · The paper itself

Abstract

A recent description of an antibody-free assay is significantly extended for small molecule analytes using allosteric transcription factors (aTFs) and Förster resonance energy transfer (FRET). The FRET signal indicates the differential binding of an aTF-DNA pair with a dose-dependent response to its effector molecule, i.e., the analyte. The new sensors described here, based on the well-characterized aTF TetR, demonstrate several new features of the assay approach: 1) the generalizability of the sensors to additional aTF-DNA-analyte systems, 2) sensitivity modulation through the choice of donor fluorophore (quantum dots or fluorescent proteins, FPs), and 3) sensor tuning using aTF variants with differing aTF-DNA binding affinities. While all of these modular sensors self-assemble, the design reported here based on a recombinant aTF-FP chimera with commercially available dye-labeled DNA uses readily accessible sensor components to facilitate easy adoption of the sensing approach by the broader community.

Indexed as

Biosensing TechniquesDNAFluorescence Resonance Energy TransferTranscription FactorsFluorescent DyesQuantum DotsDNAFluorescent DyesTranscription Factorsantibody-free assaysbiosensorsFörster resonance energy transfer (FRET)homogeneous assaysmolecular recognitionquantum dotssmall molecule quantification

Identifiers

PMID32249506
PMCPMC7359203
OpenAlexW3014689626

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.