Evidence map›Paper›PMID 32247330›Full record

ArticleBiophysical journal2020

Excess dNTPs Trigger Oscillatory Surface Flow in the Early Drosophila Embryo.

Sayantan Dutta, Nareg J-V Djabrayan, Celia M Smits, Clarence W Rowley, Stanislav Y Shvartsman

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.2field-weighted citation impact, top 51% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 3 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Sayantan DuttaDepartment of Chemical and Biological Engineering, Princeton University, Princeton, New Jersey.
Nareg J-V DjabrayanLewis Sigler Institute of Integrative Genomics, Princeton University, Princeton, New Jersey.
Celia M SmitsDepartment of Molecular Biology, Princeton University, Princeton, New Jersey.
Clarence W RowleyDepartment of Mechanical and Aerospace Engineering, Princeton University, Princeton, New Jersey.
Stanislav Y ShvartsmanDepartment of Chemical and Biological Engineering, Princeton University, Princeton, New Jersey; Lewis Sigler Institute of Integrative Genomics, Princeton University, Princeton, New Jersey; Department of Molecular Biology, Princeton University, Princeton, New Jersey; Center for Computational Biology, Flatiron Institute, New York, New York. Electronic address: stas@princeton.edu.
Princeton University · US

Funding

Collective dynamics in cell clustersR01GM134204 · NIGMS · PRINCETON UNIVERSITY · PI Stanislav Y. Shvartsman · 2019 to 2026
$2.6M
Mechanisms of signal integration in developmental control of organ size and tissue patterningR01HD085870 · NICHD · UNIVERSITY OF MASSACHUSETTS BOSTON · PI VERAKSA, ALEXEY · 2016 to 2020
$1.6M
NICHD NIH HHS R01 HD085870NIGMS NIH HHS R01 GM134204
6 · The paper itself

Abstract

During the first 2 hours of Drosophila development, precisely orchestrated nuclear cleavages, cytoskeletal rearrangements, and directed membrane growth lead to the formation of an epithelial sheet around the yolk. The newly formed epithelium remains relatively quiescent during the next hour as it is patterned by maternal inductive signals and zygotic gene products. We discovered that this mechanically quiet period is disrupted in embryos with high levels of dNTPs, which have been recently shown to cause abnormally fast nuclear cleavages and interfere with zygotic transcription. High levels of dNTPs are associated with robust onset of oscillatory two-dimensional flows during the third hour of development. Tissue cartography, particle image velocimetry, and dimensionality reduction techniques reveal that these oscillatory flows are low dimensional and are characterized by the presence of spiral vortices. We speculate that these aberrant flows emerge through an instability triggered by deregulated mechanical coupling between the nascent epithelium and three-dimensional yolk. These results highlight an unexplored connection between a core metabolic process and large-scale mechanics in a rapidly developing embryo.

Indexed as

DrosophilaDrosophila ProteinsAnimalsEmbryo, NonmammalianGene Expression Regulation, DevelopmentalZygoteDrosophila Proteins

Identifiers

PMID32247330
PMCPMC7231883
OpenAlexW3013025928

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.