Evidence map›Paper›PMID 32246719›Full record

ArticleNucleic acids research2020

Development of a genetic toolset for the highly engineerable and metabolically versatile Acinetobacter baylyi ADP1.

Bradley W Biggs, Stacy R Bedore, Erika Arvay, Shu Huang, Harshith Subramanian, Emily A McIntyre, Chantel V Duscent-Maitland, Ellen L Neidle, Keith E J Tyo

Abstract read
In one paragraph

Article in Nucleic acids research, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed.

  1. Article
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  5. Review
  6. Article
  7. Article
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  9. Article
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  11. Article
  12. Metabolic engineering ofMetabolic engineering communications · 2024
    Article
  13. Regulation of tricarboxylate transport and metabolism inApplied and environmental microbiology · 2024
    Article
  14. Review
  15. Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. EngineeringMetabolic engineering communications · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Bradley W BiggsDepartment of Chemical and Biological Engineering, Northwestern University, Evanston, IL 60208, USA.
Stacy R BedoreDepartment of Microbiology, University of Georgia, Athens, GA 30602, USA.
Erika ArvayDepartment of Chemical and Biological Engineering, Northwestern University, Evanston, IL 60208, USA.
Shu HuangDepartment of Chemical and Biological Engineering, Northwestern University, Evanston, IL 60208, USA.
Harshith SubramanianMaster of Science in Biotechnology Program, Northwestern University, Evanston, IL 60208, USA.
Emily A McIntyreDepartment of Microbiology, University of Georgia, Athens, GA 30602, USA.
Chantel V Duscent-MaitlandDepartment of Microbiology, University of Georgia, Athens, GA 30602, USA.
Ellen L NeidleDepartment of Microbiology, University of Georgia, Athens, GA 30602, USA.
Keith E J TyoDepartment of Chemical and Biological Engineering, Northwestern University, Evanston, IL 60208, USA.

Funding

Developing Capacity to Evaluate Training Programs via Development of Human, Institutional and Social CapitalT32GM008449 · NIGMS · NORTHWESTERN UNIVERSITY · PI LEONARD, JOSHUA NATHANIEL · 1993 to 2023
$7.8M
NIGMS NIH HHS T32 GM008449
6 · The paper itself

Abstract

One primary objective of synthetic biology is to improve the sustainability of chemical manufacturing. Naturally occurring biological systems can utilize a variety of carbon sources, including waste streams that pose challenges to traditional chemical processing, such as lignin biomass, providing opportunity for remediation and valorization of these materials. Success, however, depends on identifying micro-organisms that are both metabolically versatile and engineerable. Identifying organisms with this combination of traits has been a historic hindrance. Here, we leverage the facile genetics of the metabolically versatile bacterium Acinetobacter baylyi ADP1 to create easy and rapid molecular cloning workflows, including a Cas9-based single-step marker-less and scar-less genomic integration method. In addition, we create a promoter library, ribosomal binding site (RBS) variants and test an unprecedented number of rationally integrated bacterial chromosomal protein expression sites and variants. At last, we demonstrate the utility of these tools by examining ADP1's catabolic repression regulation, creating a strain with improved potential for lignin bioprocessing. Taken together, this work highlights ADP1 as an ideal host for a variety of sustainability and synthetic biology applications.

Indexed as

Metabolic EngineeringAcinetobacterCloning, MolecularGenome, BacterialGenomicsLigninPromoter Regions, GeneticRibosomesLignin

Identifiers

PMID32246719
PMCPMC7229861

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.