Evidence map›Paper›PMID 32246349›Full record

ArticlePlanta2020

Genome-wide analysis of glycerol-3-phosphate O-acyltransferase gene family and functional characterization of two cutin group GPATs in Brassica napus.

Jingxue Wang, Sanjay Kumar Singh, Siyu Geng, Shanshan Zhang, Ling Yuan

Abstract read
PubMed Publisher
In one paragraph

Article in Planta, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Genome-Wide Identification of the GPAT Family inPlants (Basel, Switzerland) · 2024
    Article
  3. Article
  4. Article
  5. Genetic breakthroughs in theFrontiers in plant science · 2023
    Review
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Jingxue WangSchool of Life Science, Shanxi University, Taiyuan, Shanxi, China. jingxuew@sxu.edu.cn.
Sanjay Kumar SinghDepartment of Plant and Soil Sciences and the Kentucky Tobacco Research and Development Center, University of Kentucky, Lexington, KY, 40546, USA.
Siyu GengSchool of Life Science, Shanxi University, Taiyuan, Shanxi, China.
Shanshan ZhangSchool of Life Science, Shanxi University, Taiyuan, Shanxi, China.
Ling YuanSchool of Life Science, Shanxi University, Taiyuan, Shanxi, China. jingxuew@sxu.edu.cn.ORCID http://orcid.org/0000-0003-4767-5761
Shanxi University · CNUniversity of Kentucky · US

Funding

Higher Education Institution Project of Shanxi Province 20181401Shanxi Provincial Key Research and Development Project (CN) 201803D421016State Administration of Foreign Experts Affairs (CN) 110000241120180012
6 · The paper itself

Abstract

MAIN

conclusionGenome-wide identification, spatio-temporal expression analysis and functional characterization of selected Brassica napus GPATs highlight their roles in cuticular wax biosynthesis and defense against fungal pathogens. Glycerol-3-phosphate 1-O-acyltransferase (GPAT) is a key enzyme in the biosynthesis of glycerolipids, a major component of cellular membranes and extracellular protective layers, such as cuticles in plants. Brassica napus is an economically important crop and cultivated worldwide mostly for its edible oil. The B. napus GPATs (BnGPATs) are insufficiently characterized. Here, we performed genome-wide analysis to identify putative GPATs in B. napus and its diploid progenitors B. rapa and B oleracea. The 32 B. napus BnGPATs are phylogenetically divided into three major groups, cutin, suberin, and diverse ancient groups. Analysis of transcriptomes of different tissues and seeds at different developmental stages revealed the spatial and temporal expression profiles of BnGPATs. The yield and oil quality of B. napus are adversely affected by the necrotrophic fungus, Sclerotinia sclerotiorum. We showed that several BnGPATs, including cutin-related BnGPAT19 and 21, were upregulated in the S. sclerotiorum resistant line. RNAi-mediated suppression of BnGPAT19 and 21 in B. napus resulted in thinner cuticle, leading to rapid water and chlorophyll loss in toluidine blue staining and leaf bleaching assays. In addition, the RNAi plants also developed severe necrotic lesions following fungal inoculation compared to the wild-type plants, indicating that BnGPAT19 and 21 are likely involved in cuticular wax biosynthesis that is critical for initial pathogen defense. Taken together, we provided a comprehensive account of GPATs B. napus and characterized BnGPAT19 and 21 for their potential roles in cuticular wax biosynthesis and defense against fungal pathogens.

Indexed as

AscomycotaBrassica napusDisease ResistanceGene Expression Regulation, PlantGlycerol-3-Phosphate O-AcyltransferaseLipidsMembrane LipidsPhylogenyPlant DiseasesPlant LeavesPlant ProteinsSeedsTranscriptomecutinGlycerol-3-Phosphate O-AcyltransferaseLipidsMembrane LipidsPlant ProteinssuberinBrassica napusCuticle formationSclerotinia sclerotiorumSn-glycerol-3-phosphate 1-O-acyltransferaseTranscriptomes

Identifiers

PMID32246349
OpenAlexW3014929182

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.