Evidence map›Paper›PMID 32246060›Full record

ArticleCommunications biology2020

Transmembrane protein rotaxanes reveal kinetic traps in the refolding of translocated substrates.

Jianfei Feng, Pablo Martin-Baniandres, Michael J Booth, Gianluca Veggiani, Mark Howarth, Hagan Bayley, David Rodriguez-Larrea

Open access · goldAbstract read
In one paragraph

Article in Communications biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.8field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Review
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Jianfei FengDepartment of Chemistry, University of Oxford, 12 Mansfield Road, Oxford, OX1 3TA, UK.
Pablo Martin-BaniandresDepartment of Chemistry, University of Oxford, 12 Mansfield Road, Oxford, OX1 3TA, UK.
Michael J BoothDepartment of Chemistry, University of Oxford, 12 Mansfield Road, Oxford, OX1 3TA, UK.ORCID http://orcid.org/0000-0002-4224-798X
Gianluca VeggianiDepartment of Biochemistry, University of Oxford, South Parks Road, Oxford, OX1 3QU, UK.
Mark HowarthDepartment of Biochemistry, University of Oxford, South Parks Road, Oxford, OX1 3QU, UK.ORCID http://orcid.org/0000-0001-8870-7147
Hagan BayleyDepartment of Chemistry, University of Oxford, 12 Mansfield Road, Oxford, OX1 3TA, UK. hagan.bayley@chem.ox.ac.uk.ORCID http://orcid.org/0000-0003-2499-6116
David Rodriguez-LarreaDepartment of Biochemistry and Molecular Biology (UPV/EHU), Biofisika Institute (CSIC, UPV/EHU), Barrio Sarriena s/n, 48940, Leioa, Spain. david.rodriguezl@ehu.es.ORCID http://orcid.org/0000-0002-5580-7413
University of Oxford · GBOxford Research Group · GBUniversity of the Basque Country · ES

Funding

Biotechnology and Biological Sciences Research Council BB/M02122X/1Medical Research Council
6 · The paper itself

Abstract

Understanding protein folding under conditions similar to those found in vivo remains challenging. Folding occurs mainly vectorially as a polypeptide emerges from the ribosome or from a membrane translocon. Protein folding during membrane translocation is particularly difficult to study. Here, we describe a single-molecule method to characterize the folded state of individual proteins after membrane translocation, by monitoring the ionic current passing through the pore. We tag both N and C termini of a model protein, thioredoxin, with biotinylated oligonucleotides. Under an electric potential, one of the oligonucleotides is pulled through a α-hemolysin nanopore driving the unfolding and translocation of the protein. We trap the protein in the nanopore as a rotaxane-like complex using streptavidin stoppers. The protein is subjected to cycles of unfolding-translocation-refolding switching the voltage polarity. We find that the refolding pathway after translocation is slower than in bulk solution due to the existence of kinetic traps.

Indexed as

Bacterial ToxinsCell MembraneEscherichia coli ProteinsHemolysin ProteinsKineticsMembrane PotentialsMembranes, ArtificialProtein DomainsProtein FoldingProtein TransportProtein UnfoldingRotaxanesSingle Molecule ImagingStructure-Activity RelationshipThioredoxinsBacterial ToxinsEscherichia coli ProteinsHemolysin ProteinsMembranes, ArtificialRotaxanesstaphylococcal alpha-toxinThioredoxinstrxC protein, E coli

Identifiers

PMID32246060
PMCPMC7125113
OpenAlexW3014887316

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.