Evidence map›Paper›PMID 32246033›Full record

ArticleScientific reports2020

Microbiome and ecology of a hot spring-microbialite system on the Trans-Himalayan Plateau.

Chayan Roy, Moidu Jameela Rameez, Prabir Kumar Haldar, Aditya Peketi, Nibendu Mondal, Utpal Bakshi, Tarunendu Mapder, Prosenjit Pyne, Svetlana Fernandes, Sabyasachi Bhattacharya and 9 more

Abstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Chayan RoyDepartment of Microbiology, Bose Institute, P-1/12 CIT Scheme VIIM, Kolkata, 700054, India.
Moidu Jameela RameezDepartment of Microbiology, Bose Institute, P-1/12 CIT Scheme VIIM, Kolkata, 700054, India.
Prabir Kumar HaldarDepartment of Microbiology, Bose Institute, P-1/12 CIT Scheme VIIM, Kolkata, 700054, India.
Aditya PeketiGas Hydrate Research Group, Geological Oceanography, CSIR-National Institute of Oceanography, Dona Paula, Goa, 403004, India.
Nibendu MondalDepartment of Microbiology, Bose Institute, P-1/12 CIT Scheme VIIM, Kolkata, 700054, India.
Utpal BakshiMicrobiome Program, Center for Individualized Medicine, Mayo Clinic, Rochester, MN-55905, USA.
Tarunendu MapderARC CoE for Mathematical and Statistical Frontiers, School of Mathematical Sciences, Queensland University of Technology, Brisbane, QLD 4000, Australia.
Prosenjit PyneDepartment of Microbiology, Bose Institute, P-1/12 CIT Scheme VIIM, Kolkata, 700054, India.
Svetlana FernandesGas Hydrate Research Group, Geological Oceanography, CSIR-National Institute of Oceanography, Dona Paula, Goa, 403004, India.
Sabyasachi BhattacharyaDepartment of Microbiology, Bose Institute, P-1/12 CIT Scheme VIIM, Kolkata, 700054, India.ORCID http://orcid.org/0000-0002-0377-375X
Rimi RoyDepartment of Microbiology, Bose Institute, P-1/12 CIT Scheme VIIM, Kolkata, 700054, India.
Subhrangshu MandalDepartment of Microbiology, Bose Institute, P-1/12 CIT Scheme VIIM, Kolkata, 700054, India.
William Kenneth O'NeillInstitute for Global Food Security, School of Biological Sciences, Queen's University Belfast, 19 Chlorine Gardens, Belfast, BT9 5DL, Northern Ireland.ORCID http://orcid.org/0000-0002-6074-658X
Aninda MazumdarGas Hydrate Research Group, Geological Oceanography, CSIR-National Institute of Oceanography, Dona Paula, Goa, 403004, India.
Subhra Kanti MukhopadhyayDepartment of Microbiology, University of Burdwan, Burdwan, West Bengal, 713104, India.
Ambarish MukherjeeDepartment of Botany, University of Burdwan, Burdwan, West Bengal, 713104, India.
Ranadhir ChakrabortyDepartment of Biotechnology, University of North Bengal, Siliguri, West Bengal, 734013, India.
John Edward HallsworthInstitute for Global Food Security, School of Biological Sciences, Queen's University Belfast, 19 Chlorine Gardens, Belfast, BT9 5DL, Northern Ireland.ORCID http://orcid.org/0000-0001-6797-9362
Wriddhiman GhoshDepartment of Microbiology, Bose Institute, P-1/12 CIT Scheme VIIM, Kolkata, 700054, India. wriman@jcbose.ac.in.ORCID http://orcid.org/0000-0002-4922-7404

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Little is known about life in the boron-rich hot springs of Trans-Himalayas. Here, we explore the geomicrobiology of a 4438-m-high spring which emanates ~70 °C-water from a boratic microbialite called Shivlinga. Due to low atmospheric pressure, the vent-water is close to boiling point so can entropically destabilize biomacromolecular systems. Starting from the vent, Shivlinga's geomicrobiology was revealed along the thermal gradients of an outflow-channel and a progressively-drying mineral matrix that has no running water; ecosystem constraints were then considered in relation to those of entropically comparable environments. The spring-water chemistry and sinter mineralogy were dominated by borates, sodium, thiosulfate, sulfate, sulfite, sulfide, bicarbonate, and other macromolecule-stabilizing (kosmotropic) substances. Microbial diversity was high along both of the hydrothermal gradients. Bacteria, Eukarya and Archaea constituted >98%, ~1% and <1% of Shivlinga's microbiome, respectively. Temperature constrained the biodiversity at ~50 °C and ~60 °C, but not below 46 °C. Along each thermal gradient, in the vent-to-apron trajectory, communities were dominated by Aquificae/Deinococcus-Thermus, then Chlorobi/Chloroflexi/Cyanobacteria, and finally Bacteroidetes/Proteobacteria/Firmicutes. Interestingly, sites of >45 °C were inhabited by phylogenetic relatives of taxa for which laboratory growth is not known at >45 °C. Shivlinga's geomicrobiology highlights the possibility that the system's kosmotrope-dominated chemistry mitigates against the biomacromolecule-disordering effects of its thermal water.

Indexed as

ExtremophilesGeologic SedimentsHot SpringsHot TemperatureMicrobiotaMineralsPhylogenyMinerals

Identifiers

PMID32246033
PMCPMC7125080

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.