Evidence map›Paper›PMID 32245946›Full record

ArticleNature communications2020

Translational derepression of Elavl4 isoforms at their alternative 5' UTRs determines neuronal development.

Tatiana Popovitchenko, Yongkyu Park, Nicholas F Page, Xiaobing Luo, Zeljka Krsnik, Yuan Liu, Iva Salamon, Jessica D Stephenson, Matthew L Kraushar, Nicole L Volk and 16 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
3.3field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 56 citations in OpenAlex.

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  12. Rbfox1 regulates alternative splicing of Nrcam in primary sensory neurons to mediate peripheral nerve injury-induced neuropathic pain.Neurotherapeutics : the journal of the American Society for Experimental NeuroTherapeutics · 2024
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  15. Article
  16. Article
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  18. Article
  19. The Functional Meaning of 5'UTR in Protein-Coding Genes.International journal of molecular sciences · 2023
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors at 6 institutions in 5 countries.

Tatiana PopovitchenkoDepartment of Neuroscience and Cell Biology, Rutgers University, Robert Wood Johnson Medical School, Piscataway, NJ, 08854, USA.ORCID http://orcid.org/0000-0002-6600-4667
Yongkyu ParkDepartment of Neuroscience and Cell Biology, Rutgers University, Robert Wood Johnson Medical School, Piscataway, NJ, 08854, USA.ORCID http://orcid.org/0000-0001-6741-6447
Nicholas F PageDepartment of Neuroscience and Cell Biology, Rutgers University, Robert Wood Johnson Medical School, Piscataway, NJ, 08854, USA.ORCID http://orcid.org/0000-0001-7173-5408
Xiaobing LuoDepartment of Neuroscience and Cell Biology, Rutgers University, Robert Wood Johnson Medical School, Piscataway, NJ, 08854, USA.
Zeljka KrsnikCroatian Institute for Brain Research, Center of Research Excellence for Basic, Clinical and Translational Neuroscience, University of Zagreb, School of Medicine, Zagreb, 10000, Croatia.ORCID http://orcid.org/0000-0001-5238-6820
Yuan LiuDepartment of Neuroscience and Cell Biology, Rutgers University, Robert Wood Johnson Medical School, Piscataway, NJ, 08854, USA.
Iva SalamonDepartment of Neuroscience and Cell Biology, Rutgers University, Robert Wood Johnson Medical School, Piscataway, NJ, 08854, USA.ORCID http://orcid.org/0000-0003-3817-1983
Jessica D StephensonDepartment of Neuroscience and Cell Biology, Rutgers University, Robert Wood Johnson Medical School, Piscataway, NJ, 08854, USA.ORCID http://orcid.org/0000-0001-9807-8436
Matthew L KrausharDepartment of Neuroscience and Cell Biology, Rutgers University, Robert Wood Johnson Medical School, Piscataway, NJ, 08854, USA.ORCID http://orcid.org/0000-0002-7359-0318
Nicole L VolkDepartment of Neuroscience and Cell Biology, Rutgers University, Robert Wood Johnson Medical School, Piscataway, NJ, 08854, USA.
Sejal M PatelDepartment of Neuroscience and Cell Biology, Rutgers University, Robert Wood Johnson Medical School, Piscataway, NJ, 08854, USA.
H R Sagara WijeratneDepartment of Neuroscience and Cell Biology, Rutgers University, Robert Wood Johnson Medical School, Piscataway, NJ, 08854, USA.
Diana LiDepartment of Neuroscience and Cell Biology, Rutgers University, Robert Wood Johnson Medical School, Piscataway, NJ, 08854, USA.
Kandarp S SutharDepartment of Neuroscience and Cell Biology, Rutgers University, Robert Wood Johnson Medical School, Piscataway, NJ, 08854, USA.ORCID http://orcid.org/0000-0001-8739-728X
Aaron WachDepartment of Neuroscience and Cell Biology, Rutgers University, Robert Wood Johnson Medical School, Piscataway, NJ, 08854, USA.ORCID http://orcid.org/0000-0003-0963-2779
Miao SunDepartment of Neuroscience and Cell Biology, Rutgers University, Robert Wood Johnson Medical School, Piscataway, NJ, 08854, USA.
Sebastian J ArnoldInstitute of Experimental and Clinical Pharmacology and Toxicology, Faculty of Medicine, Signaling Research Centers BIOSS and CIBSS, University of Freiburg, Freiburg, D-79104, Germany.ORCID http://orcid.org/0000-0002-2688-9210
Wado AkamatsuDepartment of Physiology, Keio University School of Medicine, Tokyo, 160-8582, Japan.
Hideyuki OkanoDepartment of Physiology, Keio University School of Medicine, Tokyo, 160-8582, Japan.
Luc PaillardUniv Rennes, CNRS, IGDR (Institut de génétique et développement de Rennes)-UMR 6290, F-35000, Rennes, France.
Huaye ZhangDepartment of Neuroscience and Cell Biology, Rutgers University, Robert Wood Johnson Medical School, Piscataway, NJ, 08854, USA.
Steven BuyskeDepartment of Statistics, Rutgers University, Piscataway, NJ, 08854, USA.ORCID http://orcid.org/0000-0001-8539-5416
Ivica KostovicCroatian Institute for Brain Research, Center of Research Excellence for Basic, Clinical and Translational Neuroscience, University of Zagreb, School of Medicine, Zagreb, 10000, Croatia.
Silvia De RubeisDepartment of Psychiatry, Icahn School of Medicine at Mount Sinai, 1 Gustave L. Levy Pl, New York, NY, 10029, USA.
Ronald P HartDepartment of Cell Biology and Neuroscience, Rutgers University, Piscataway, NJ, 08854, USA.ORCID http://orcid.org/0000-0003-4836-8712
Mladen-Roko RasinDepartment of Neuroscience and Cell Biology, Rutgers University, Robert Wood Johnson Medical School, Piscataway, NJ, 08854, USA. roko.rasin@rutgers.edu.
Rutgers, The State University of New Jersey · USKeio University · JPUniversity of Zagreb · HRAllen Institute for Brain Science · USCentre National de la Recherche Scientifique · FRUniversity of Freiburg · DE

Funding

Role of first neocortical RNA-Operon in specification of neocortical projection neuronsR01NS075367 · NINDS · UNIV OF MED/DENT NJ-R W JOHNSON MED SCH · PI RASIN, MLADEN ROKO · 2011 to 2021
$3.4M
Polarity determinants in synaptic stability and plasticityR01NS089578 · NINDS · RBHS-ROBERT WOOD JOHNSON MEDICAL SCHOOL · PI ZHANG, HUAYE · 2015 to 2019
$1.9M
Molecular Control of Corticospinal System Formation by Intermediate TargetsR00NS064303 · NINDS · UNIV OF MED/DENT NJ-R W JOHNSON MED SCH · PI RASIN, MLADEN ROKO · 2010 to 2012
$741k
Molecular Control of Corticospinal System Formation by Intermediate TargetsK99NS064303 · NINDS · YALE UNIVERSITY · PI RASIN, MLADEN ROKO · 2009 to 2009
$97k
Timed mRNA translation events in neocortical development and neurodevelopmental disordersF30MH106220 · NIMH · RBHS-ROBERT WOOD JOHNSON MEDICAL SCHOOL · PI KRAUSHAR, MATTHEW LEE · 2014 to 2015
$79k
NIMH NIH HHS F30 MH106220NINDS NIH HHS K99 NS064303NINDS NIH HHS R00 NS064303NINDS NIH HHS R01 NS075367NINDS NIH HHS R01 NS089578
6 · The paper itself

Abstract

Neurodevelopment requires precise regulation of gene expression, including post-transcriptional regulatory events such as alternative splicing and mRNA translation. However, translational regulation of specific isoforms during neurodevelopment and the mechanisms behind it remain unknown. Using RNA-seq analysis of mouse neocortical polysomes, here we report translationally repressed and derepressed mRNA isoforms during neocortical neurogenesis whose orthologs include risk genes for neurodevelopmental disorders. We demonstrate that the translation of distinct mRNA isoforms of the RNA binding protein (RBP), Elavl4, in radial glia progenitors and early neurons depends on its alternative 5' UTRs. Furthermore, 5' UTR-driven Elavl4 isoform-specific translation depends on upstream control by another RBP, Celf1. Celf1 regulation of Elavl4 translation dictates development of glutamatergic neurons. Our findings reveal a dynamic interplay between distinct RBPs and alternative 5' UTRs in neuronal development and underscore the risk of post-transcriptional dysregulation in co-occurring neurodevelopmental disorders.

Indexed as

Gene Expression Regulation, Developmental5' Untranslated RegionsAlternative SplicingAnimalsCELF1 ProteinCell Line, TumorELAV-Like Protein 4FemaleGlutamic AcidMaleMiceMice, TransgenicNeocortexNeural Stem CellsNeurogenesisNeuroglia5' Untranslated RegionsCELF1 ProteinCELF1 protein, mouseElavl4 protein, mouseELAV-Like Protein 4Glutamic AcidRNA Isoforms

Identifiers

PMID32245946
PMCPMC7125149
OpenAlexW3015005771

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.