Evidence map›Paper›PMID 32245943›Full record

ArticleNature communications2020

The circadian clock and darkness control natural competence in cyanobacteria.

Arnaud Taton, Christian Erikson, Yiling Yang, Benjamin E Rubin, Scott A Rifkin, James W Golden, Susan S Golden

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 65 papers.

0numbers the graph read from it
0cells of the map it votes in
65citing papers in PubMed
24.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

65 citing papers in PubMed, 111 citations in OpenAlex.

  1. Article
  2. Two D-loop resolution systems enable natural genetic transformation in bacteria.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  3. Review
  4. Review
  5. Article
  6. Article
  7. Article
  8. Review
  9. Review
  10. Article
  11. Circadian clock proteins KaiB and Rbp2 ofMicrobiology spectrum · 2026
    Article
  12. Article
  13. Suppressor analysis inFrontiers in microbiology · 2026
    Article
  14. Article
  15. Article
  16. Mutations in the circadian cycle drive adaptive plasticity in cyanobacteria.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  17. Article
  18. Article
  19. Review
  20. Review

5 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 2 countries.

Arnaud TatonDivision of Biological Sciences, University of California, San Diego, La Jolla, CA, 92093, USA.ORCID http://orcid.org/0000-0001-5494-5964
Christian EriksonDivision of Biological Sciences, University of California, San Diego, La Jolla, CA, 92093, USA.ORCID http://orcid.org/0000-0001-5479-5193
Yiling YangCenter for Circadian Biology, University of California, San Diego, La Jolla, CA, 92093, USA.ORCID http://orcid.org/0000-0002-2882-0743
Benjamin E RubinDivision of Biological Sciences, University of California, San Diego, La Jolla, CA, 92093, USA.ORCID http://orcid.org/0000-0001-8684-2417
Scott A RifkinDivision of Biological Sciences, University of California, San Diego, La Jolla, CA, 92093, USA.ORCID http://orcid.org/0000-0001-8476-3256
James W GoldenDivision of Biological Sciences, University of California, San Diego, La Jolla, CA, 92093, USA.ORCID http://orcid.org/0000-0001-5463-3207
Susan S GoldenDivision of Biological Sciences, University of California, San Diego, La Jolla, CA, 92093, USA. sgolden@ucsd.edu.ORCID http://orcid.org/0000-0002-4264-7019
University of California San Diego · US

Funding

Undergraduate Summer Research Experience: Molecular and cellular mechanisms of circadian timekeeping in a prokaryote modelR35GM118290 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI GOLDEN, SUSAN S · 2016 to 2025
$6.7M
Development of an efficient cyanobacterial platform for heterologous expression and biosynthetic interrogations of natural products.R01GM118815 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI GERWICK, LENA, GERWICK, WILLIAM HENRY · 2017 to 2020
$1.2M
NIGMS NIH HHS R01 GM118815NIGMS NIH HHS R35 GM118290
6 · The paper itself

Abstract

The cyanobacterium Synechococcus elongatus is a model organism for the study of circadian rhythms. It is naturally competent for transformation-that is, it takes up DNA from the environment, but the underlying mechanisms are unclear. Here, we use a genome-wide screen to identify genes required for natural transformation in S. elongatus, including genes encoding a conserved Type IV pilus, genes known to be associated with competence in other bacteria, and others. Pilus biogenesis occurs daily in the morning, while natural transformation is maximal when the onset of darkness coincides with the dusk circadian peak. Thus, the competence state in cyanobacteria is regulated by the circadian clock and can adapt to seasonal changes of day length.

Indexed as

Adaptation, PhysiologicalBacterial ProteinsCircadian ClocksCircadian Rhythm Signaling Peptides and ProteinsDarknessDNA Transposable ElementsFimbriae, BacterialGene Expression Regulation, BacterialGene Transfer, HorizontalModels, BiologicalMutationSeasonsSynechococcusTranscription FactorsTransformation, BacterialBacterial ProteinsCircadian Rhythm Signaling Peptides and ProteinsDNA Transposable ElementsTranscription Factors

Identifiers

PMID32245943
PMCPMC7125226
OpenAlexW3014286189

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.