Evidence map›Paper›PMID 32245806›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2020

Cryo-EM structure of eastern equine encephalitis virus in complex with heparan sulfate analogues.

Chun-Liang Chen, S Saif Hasan, Thomas Klose, Yingyuan Sun, Geeta Buda, Chengqun Sun, William B Klimstra, Michael G Rossmann

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
4.5field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 41 citations in OpenAlex.

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  18. Cryo-EM structures of alphavirus conformational intermediates in low pH-triggered prefusion states.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  19. Is heparan sulfate a target for inhibition of RNA virus infection?American journal of physiology. Cell physiology · 2022
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Chun-Liang ChenDepartment of Biological Sciences, Purdue University, West Lafayette, IN 47907.ORCID 0000-0003-4625-4340
S Saif HasanDepartment of Biological Sciences, Purdue University, West Lafayette, IN 47907.
Thomas KloseDepartment of Biological Sciences, Purdue University, West Lafayette, IN 47907; tklose@purdue.edu.ORCID 0000-0002-2150-9792
Yingyuan SunDepartment of Biological Sciences, Purdue University, West Lafayette, IN 47907.ORCID 0000-0003-3972-0235
Geeta BudaDepartment of Biological Sciences, Purdue University, West Lafayette, IN 47907.
Chengqun SunDepartment of Immunology, University of Pittsburgh, Pittsburgh, PA 15261.
William B KlimstraDepartment of Immunology, University of Pittsburgh, Pittsburgh, PA 15261.
Michael G RossmannDepartment of Biological Sciences, Purdue University, West Lafayette, IN 47907.
Purdue University West Lafayette · USUniversity of Pittsburgh · US

Funding

Structural Studies of TogavirusesR01AI095366 · NIAID · PURDUE UNIVERSITY · PI KUHN, RICHARD J. · 2012 to 2023
$6.8M
Molecular Mechanisms of Eastern Equine Encephalitis Virus PathogenesisR01AI095436 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI KLIMSTRA, WILLIAM B · 2012 to 2022
$4.5M
An Informed Approach to Live Attenuated Vaccines against Encephalitis AlphavirusesR01AI153209 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI KLIMSTRA, WILLIAM B · 2020 to 2024
$2.9M
NIAID NIH HHS R01 AI095366NIAID NIH HHS R01 AI095436NIAID NIH HHS R01 AI153209
6 · The paper itself

Abstract

Eastern equine encephalitis virus (EEEV), a mosquito-borne icosahedral alphavirus found mainly in North America, causes human and equine neurotropic infections. EEEV neurovirulence is influenced by the interaction of the viral envelope protein E2 with heparan sulfate (HS) proteoglycans from the host's plasma membrane during virus entry. Here, we present a 5.8-Å cryoelectron microscopy (cryo-EM) structure of EEEV complexed with the HS analog heparin. "Peripheral" HS binding sites were found to be associated with the base of each of the E2 glycoproteins that form the 60 quasi-threefold spikes (q3) and the 20 sites associated with the icosahedral threefold axes (i3). In addition, there is one HS site at the vertex of each q3 and i3 spike (the "axial" sites). Both the axial and peripheral sites are surrounded by basic residues, suggesting an electrostatic mechanism for HS binding. These residues are highly conserved among EEEV strains, and therefore a change in these residues might be linked to EEEV neurovirulence.

Indexed as

Drug DesignAnimalsAntiviral AgentsBinding SitesCell LineChondroitin SulfatesCryoelectron MicroscopyEncephalitis Virus, Eastern EquineEncephalomyelitis, EquineHeparan Sulfate ProteoglycansHeparinHumansMesocricetusMolecular StructureStructure-Activity RelationshipViral Envelope ProteinsAntiviral AgentsChondroitin Sulfatesglycoprotein E2, equine encephalitis virusHeparan Sulfate ProteoglycansHeparinViral Envelope Proteinsalphaviruscryoelectron microscopyheparan sulfate proteoglycaninfectionstructure

Identifiers

PMID32245806
PMCPMC7183182
OpenAlexW3014782223

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.