Evidence map›Paper›PMID 32245762›Full record

ArticleApplied and environmental microbiology2020

Custom Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometric Database for Identification of Environmental Isolates of the Genus

Claire H Fergusson, Julienne M F Coloma, Mercia C Valentine, F P Jake Haeckl, Roger G Linington

Open access · greenAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.6field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Methodological tools to study species of the genus Burkholderia.Applied microbiology and biotechnology · 2021
    Review
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Claire H FergussonDepartment of Chemistry, Simon Fraser University, Burnaby, British Columbia, Canada.
Julienne M F ColomaDepartment of Chemistry, Simon Fraser University, Burnaby, British Columbia, Canada.
Mercia C ValentineDepartment of Chemistry, Simon Fraser University, Burnaby, British Columbia, Canada.
F P Jake HaecklDepartment of Chemistry, Simon Fraser University, Burnaby, British Columbia, Canada.
Roger G LiningtonDepartment of Chemistry, Simon Fraser University, Burnaby, British Columbia, Canada rliningt@sfu.ca.ORCID 0000-0003-1818-4971
Simon Fraser University · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Success of discovery programs for microbial natural products is dependent on quick and concise discrimination between isolates from diverse environments. However, laboratory isolation and identification of priority genera using current 16S rRNA PCR-based methods are both challenging and time-consuming. An emerging strategy for rapid isolate discrimination is protein fingerprinting via matrix-assisted laser desorption ionization (MALDI) mass spectrometry. Using our in-house environmental isolate repository, we have created a main spectral (MSP) library for the Bruker Biotyper MALDI mass spectrometer that contains 95 entries, including

Indexed as

Soil MicrobiologyBacteriological TechniquesBritish ColumbiaBurkholderiaRNA, BacterialRNA, Ribosomal, 16SSpecimen HandlingSpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationRNA, BacterialRNA, Ribosomal, 16SBurkholderiaisolate identificationMALDI mass spectrometrynatural products

Identifiers

PMID32245762
PMCPMC7237780
OpenAlexW3014219950

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.