Evidence map›Paper›PMID 32245178›Full record

ArticleBiology2020

Assessing Autophagy in Archived Tissue or How to Capture Autophagic Flux from a Tissue Snapshot.

Magali Humbert, María Morán, Patricia de la Cruz-Ojeda, Jordi Muntané, Tabea Wiedmer, Nadezda Apostolova, Sharon L McKenna, Guillermo Velasco, Walter Balduini, Leopold Eckhart and 8 more

Open access · goldAbstract read
In one paragraph

Article in Biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed, 1 pooled it
1.7field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 1 synthesis or guideline pooled it, 19 citations in OpenAlex.

  1. Pooled it
  2. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 12 institutions in 9 countries.

Magali HumbertTRANSAUTOPHAGY: European Network for Multidisciplinary Research and Translation of Autophagy Knowledge, COST Action CA15138, 08193 Barcelona, Spain.ORCID 0000-0003-3820-0297
María MoránTRANSAUTOPHAGY: European Network for Multidisciplinary Research and Translation of Autophagy Knowledge, COST Action CA15138, 08193 Barcelona, Spain.ORCID 0000-0001-5408-7189
Patricia de la Cruz-OjedaInstitute of Biomedicine of Seville (IBiS), Hospital University "Virgen del Rocío"/CSIC/University of Seville, 41013 Seville, Spain.
Jordi MuntanéTRANSAUTOPHAGY: European Network for Multidisciplinary Research and Translation of Autophagy Knowledge, COST Action CA15138, 08193 Barcelona, Spain.ORCID 0000-0002-6744-1121
Tabea WiedmerInstitute of Pathology, University of Bern, Murtenstrasse 31, CH-3008 Bern, Switzerland.ORCID 0000-0002-0355-9315
Nadezda ApostolovaTRANSAUTOPHAGY: European Network for Multidisciplinary Research and Translation of Autophagy Knowledge, COST Action CA15138, 08193 Barcelona, Spain.ORCID 0000-0002-4487-2471
Sharon L McKennaTRANSAUTOPHAGY: European Network for Multidisciplinary Research and Translation of Autophagy Knowledge, COST Action CA15138, 08193 Barcelona, Spain.
Guillermo VelascoTRANSAUTOPHAGY: European Network for Multidisciplinary Research and Translation of Autophagy Knowledge, COST Action CA15138, 08193 Barcelona, Spain.ORCID 0000-0002-1994-2386
Walter BalduiniTRANSAUTOPHAGY: European Network for Multidisciplinary Research and Translation of Autophagy Knowledge, COST Action CA15138, 08193 Barcelona, Spain.ORCID 0000-0001-8438-9559
Leopold EckhartTRANSAUTOPHAGY: European Network for Multidisciplinary Research and Translation of Autophagy Knowledge, COST Action CA15138, 08193 Barcelona, Spain.
Bassam JanjiTRANSAUTOPHAGY: European Network for Multidisciplinary Research and Translation of Autophagy Knowledge, COST Action CA15138, 08193 Barcelona, Spain.
Belém Sampaio-MarquesTRANSAUTOPHAGY: European Network for Multidisciplinary Research and Translation of Autophagy Knowledge, COST Action CA15138, 08193 Barcelona, Spain.
Paula LudovicoTRANSAUTOPHAGY: European Network for Multidisciplinary Research and Translation of Autophagy Knowledge, COST Action CA15138, 08193 Barcelona, Spain.ORCID 0000-0003-4130-7167
Eva ŽerovnikTRANSAUTOPHAGY: European Network for Multidisciplinary Research and Translation of Autophagy Knowledge, COST Action CA15138, 08193 Barcelona, Spain.ORCID 0000-0002-9793-8200
Rupert LangerInstitute of Pathology, University of Bern, Murtenstrasse 31, CH-3008 Bern, Switzerland.ORCID 0000-0001-9491-3609
Aurel PerrenInstitute of Pathology, University of Bern, Murtenstrasse 31, CH-3008 Bern, Switzerland.
Nikolai EngedalTRANSAUTOPHAGY: European Network for Multidisciplinary Research and Translation of Autophagy Knowledge, COST Action CA15138, 08193 Barcelona, Spain.
Mario P TschanTRANSAUTOPHAGY: European Network for Multidisciplinary Research and Translation of Autophagy Knowledge, COST Action CA15138, 08193 Barcelona, Spain.ORCID 0000-0001-5897-3647
University of Bern · CHInstituto de Salud Carlos III · ESUniversity of Minho · PTInstituto de Biomedicina de Sevilla · ESInstituto de Investigación Sanitaria del Hospital Clínico San Carlos · ESJožef Stefan Institute · SILuxembourg Institute of Health · LUMedical University of Vienna · ATOslo University Hospital · NOUniversitat de València · ESUniversity College Cork · IEUniversity of Urbino · IT

Funding

ARRS - the Slovenian research agency, programme P1-0140: Proteolysis and its regulation noneBernese Cancer League noneEuropean Regional Development Fund noneFEDER, through the COMPETE POCI-01-0145-FEDER-028159 and POCI-01-0145-FEDER-030782FIS and FEDER funds from the EU PI14/01085 and PI17/00093ISCIII and FSE funds CPII16/00023Luxembourg National Research Fund C18/BM/12670304/COMBATICNational funds, through the Foundation for Science and Technology (FCT noneNorthern Portugal Regional Operational Programme (NORTE 2020), under the Portugal 2020 Partnership Agreement, by the European Regional Development Fund (FEDER), through the Competitiveness Factors Operational Programme (COMPETE) NORTE-01-0145-FEDER-000013Stiftung für klinisch-experimentelle Tumorforschung noneSwiss National Science Foundation 31003A_173219the Spanish Minsitry of Science, Innovation and Universities RTI2018-096748-B-100the State Plan for R & D + I2013-2016 and funded by the Instituto de Salud Carlos III PI18/00442the Swiss Cancer Research KFS-3360-02-2014the Swiss Cancer Research KFS-3409-02-2014University Professor Training Fellowship, Ministry of Science, Innovation and University, Government of Spain noneWerner and Hedy Berger-Janser Foundation for Cancer Research none
6 · The paper itself

Abstract

Autophagy is a highly conserved degradation mechanism that is essential for maintaining cellular homeostasis. In human disease, autophagy pathways are frequently deregulated and there is immense interest in targeting autophagy for therapeutic approaches. Accordingly, there is a need to determine autophagic activity in human tissues, an endeavor that is hampered by the fact that autophagy is characterized by the flux of substrates whereas histology informs only about amounts and localization of substrates and regulators at a single timepoint. Despite this challenging task, considerable progress in establishing markers of autophagy has been made in recent years. The importance of establishing clear-cut autophagy markers that can be used for tissue analysis cannot be underestimated. In this review, we attempt to summarize known techniques to quantify autophagy in human tissue and their drawbacks. Furthermore, we provide some recommendations that should be taken into consideration to improve the reliability and the interpretation of autophagy biomarkers in human tissue samples.

Indexed as

autophagybiomarkersdiseasepathology

Identifiers

PMID32245178
PMCPMC7150830
OpenAlexW3011183588

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.