Evidence map›Paper›PMID 32244517›Full record

ArticleMicroorganisms2020

Investigating Algal Communities in Lacustrine and Hydro-Terrestrial Environments of East Antarctica Using Deep Amplicon Sequencing.

Yuu Hirose, Takuhei Shiozaki, Masahiro Otani, Sakae Kudoh, Satoshi Imura, Toshihiko Eki, Naomi Harada

Abstract read
In one paragraph

Article in Microorganisms, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Genome sequencing of the NIES Cyanobacteria collection with a focus on the heterocyst-forming clade.DNA research : an international journal for rapid publication of reports on genes and genomes · 2021
    Article
  4. A specific combination of dual index adaptors decreases the sensitivity of amplicon sequencing with the Illumina platform.DNA research : an international journal for rapid publication of reports on genes and genomes · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Yuu HiroseDepartment of Applied Chemistry and Life Science, Toyohashi University of Technology, 1-1 Hibarigaoka, Tempaku, Toyohashi, Aichi 441-8580, Japan.
Takuhei ShiozakiEarth Surface System Research Center, Japan Agency for Marine-Earth Science and Technology, 2-15 Natsushima-cho, Yokosuka, Kanagawa 237-0061, Japan.
Masahiro OtaniFaculty of Agriculture, Niigata University, 2-8050 Ikarashi, Niigata, Niigata 950-2181, Japan.
Sakae KudohNational Institute of Polar Research, Corporation Research Organization of Information and Systems, 10-3 Midori-cho, Tachikawa, Tokyo 190-8518, Japan.
Satoshi ImuraNational Institute of Polar Research, Corporation Research Organization of Information and Systems, 10-3 Midori-cho, Tachikawa, Tokyo 190-8518, Japan.
Toshihiko EkiDepartment of Applied Chemistry and Life Science, Toyohashi University of Technology, 1-1 Hibarigaoka, Tempaku, Toyohashi, Aichi 441-8580, Japan.
Naomi HaradaEarth Surface System Research Center, Japan Agency for Marine-Earth Science and Technology, 2-15 Natsushima-cho, Yokosuka, Kanagawa 237-0061, Japan.

Funding

Japan Society for the Promotion of Science 15H05712
6 · The paper itself

Abstract

Antarctica has one of the most extreme environments on Earth, with low temperatures and low nutrient levels. Antarctica's organisms live primarily in the coastal, ice-free areas which cover approximately 0.18% of the continent's surface. Members of Cyanobacteria and eukaryotic algae are important primary producers in Antarctica since they can synthesize organic compounds from carbon dioxide and water using solar energy. However, community structures of photosynthetic algae in Antarctica have not yet been fully explored at molecular level. In this study, we collected diverse algal samples in lacustrine and hydro-terrestrial environments of Langhovde and Skarvsnes, which are two ice-free regions in East Antarctica. We performed deep amplicon sequencing of both 16S ribosomal ribonucleic acid (rRNA) and 18S rRNA genes, and we explored the distribution of sequence variants (SVs) of these genes at single nucleotide difference resolution. SVs of filamentous Cyanobacteria genera, including

Indexed as

AlgaeAntarcticaCyanobacteriaHydro-TerrestrialLacustrineMicrobiomeTardigrade

Identifiers

PMID32244517
PMCPMC7232531

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.