Evidence map›Paper›PMID 32243845›Full record

ArticleStem cell reports2020

Epigenomic and Transcriptomic Changes During Human RPE EMT in a Stem Cell Model of Epiretinal Membrane Pathogenesis and Prevention by Nicotinamide.

Nathan C Boles, Marie Fernandes, Tomasz Swigut, Rajini Srinivasan, Lauren Schiff, Alvaro Rada-Iglesias, Qingjie Wang, Janmeet S Saini, Thomas Kiehl, Jeffrey H Stern and 3 more

Open access · goldAbstract read
In one paragraph

Article in Stem cell reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed
3.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed, 82 citations in OpenAlex.

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  15. Complement C3 Activation in the Human Retinal Pigment Epithelium.Investigative ophthalmology & visual science · 2025
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 6 institutions in 2 countries.

Nathan C BolesNeural Stem Cell Institute, Rensselaer NY 12144, USA.
Marie FernandesIcahn School of Medicine at Mount Sinai, New York, NY 10029, USA.
Tomasz SwigutDepartment of Chemical and Systems Biology, Department of Developmental Biology, Stanford University, Stanford, CA 94305, USA.
Rajini SrinivasanDepartment of Chemical and Systems Biology, Department of Developmental Biology, Stanford University, Stanford, CA 94305, USA.
Lauren SchiffNeural Stem Cell Institute, Rensselaer NY 12144, USA.
Alvaro Rada-IglesiasUniversity of Cologne, Cologne 50931, Germany.
Qingjie WangStony Brook University School of Medicine, Stony Brook, NY 11794, USA.
Janmeet S SainiNeural Stem Cell Institute, Rensselaer NY 12144, USA.
Thomas KiehlIcahn School of Medicine at Mount Sinai, New York, NY 10029, USA.
Jeffrey H SternIcahn School of Medicine at Mount Sinai, New York, NY 10029, USA.
Joanna WysockaDepartment of Chemical and Systems Biology, Department of Developmental Biology, Stanford University, Stanford, CA 94305, USA; Howard Hughes Medical Institute, Stanford, CA 94305, USA.
Timothy A BlenkinsopIcahn School of Medicine at Mount Sinai, New York, NY 10029, USA. Electronic address: timothy.blenkinsop@mssm.edu.
Sally TempleNeural Stem Cell Institute, Rensselaer NY 12144, USA. Electronic address: sallytemple@neuralsci.org.
Icahn School of Medicine at Mount Sinai · USNeural Stem Cell Institute · USStanford University · USHoward Hughes Medical Institute · USStony Brook University · USUniversity of Cologne · DE

Funding

Defining the molecular mechanisms underlying human RPE plasticityR01EY022079 · NEI · REGENERATIVE RESEARCH FOUNDATION · PI TEMPLE, SALLY · 2012 to 2016
$2.2M
Reversing Contractility in Epiretinal MembranesR01EY029736 · NEI · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI BLENKINSOP, TIMOTHY A. · 2020 to 2024
$2.0M
Transplantation of Adult, Tissue-Specific RPE Stem Cells as Therapy for Non-exudative Age-Related Macular Degeneration AMDU01EY030581 · NEI · REGENERATIVE RESEARCH FOUNDATION · PI Jeffrey H Stern · 2019 to 2026
$1.7M
Characterization of human RPE subpopulations at the single cell levelR01EY029281 · NEI · REGENERATIVE RESEARCH FOUNDATION · PI STERN, JEFFREY H · 2018 to 2021
$1.7M
NEI NIH HHS R01 EY022079NEI NIH HHS R01 EY029281NEI NIH HHS R01 EY029736NEI NIH HHS U01 EY030581
6 · The paper itself

Abstract

Epithelial to mesenchymal transition (EMT) is a biological process involved in tissue morphogenesis and disease that causes dramatic changes in cell morphology, migration, proliferation, and gene expression. The retinal pigment epithelium (RPE), which supports the neural retina, can undergo EMT, producing fibrous epiretinal membranes (ERMs) associated with vision-impairing clinical conditions, such as macular pucker and proliferative vitreoretinopathy (PVR). We found that co-treatment with TGF-β and TNF-α (TNT) accelerates EMT in adult human RPE stem cell-derived RPE cell cultures. We captured the global epigenomic and transcriptional changes elicited by TNT treatment of RPE and identified putative active enhancers associated with actively transcribed genes, including a set of upregulated transcription factors that are candidate regulators. We found that the vitamin B derivative nicotinamide downregulates these key transcriptional changes, and inhibits and partially reverses RPE EMT, revealing potential therapeutic routes to benefit patients with ERM, macular pucker and PVR.

Indexed as

EpigenomicsEpithelial-Mesenchymal TransitionModels, BiologicalAdultAgedAged, 80 and overBiomarkersEnhancer Elements, GeneticEpiretinal MembraneGene Expression RegulationHumansMiddle AgedNiacinamidePhenotypeRetinal Pigment EpitheliumStem CellsBiomarkersNiacinamideTranscription FactorsTransforming Growth Factor beta1Tumor Necrosis Factor-alphacontractilityepigeneticsepithelial to mesenchymal transitionmesenchymal-to-epithelial transitionnicotinamideproliferative vitreoretinopathyretinal pigment epitheliumwhole transcriptome

Identifiers

PMID32243845
PMCPMC7160390
OpenAlexW3014869565

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.