Evidence map›Paper›PMID 32243812›Full record

ArticleCell chemical biology2020

Cellular Stress Upregulates Indole Signaling Metabolites in Escherichia coli.

Chung Sub Kim, Jhe-Hao Li, Brenden Barco, Hyun Bong Park, Alexandra Gatsios, Ashiti Damania, Rurun Wang, Thomas P Wyche, Grazia Piizzi, Nicole K Clay and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Cell chemical biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.7field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. The Synthesis and Biological Evaluation of 2-(1Molecules (Basel, Switzerland) · 2023
    Article
  8. Cellular Stress-Induced Metabolites inJournal of natural products · 2022
    Article
  9. Article
  10. Review
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Chung Sub KimDepartment of Chemistry, Yale University, New Haven, CT 06520, USA; Chemical Biology Institute, Yale University, West Haven, CT 06516, USA.
Jhe-Hao LiDepartment of Chemistry, Yale University, New Haven, CT 06520, USA; Chemical Biology Institute, Yale University, West Haven, CT 06516, USA.
Brenden BarcoDepartment of Molecular, Cellular and Developmental Biology, Yale University, New Haven, CT 06511, USA.
Hyun Bong ParkDepartment of Chemistry, Yale University, New Haven, CT 06520, USA; Chemical Biology Institute, Yale University, West Haven, CT 06516, USA.
Alexandra GatsiosDepartment of Chemistry, Yale University, New Haven, CT 06520, USA; Chemical Biology Institute, Yale University, West Haven, CT 06516, USA.
Ashiti DamaniaDepartment of Molecular, Cellular and Developmental Biology, Yale University, New Haven, CT 06511, USA.
Rurun WangExploratory Science Center, Merck & Co., Inc., Cambridge, MA 02141, USA.
Thomas P WycheExploratory Science Center, Merck & Co., Inc., Cambridge, MA 02141, USA.
Grazia PiizziExploratory Science Center, Merck & Co., Inc., Cambridge, MA 02141, USA.
Nicole K ClayDepartment of Molecular, Cellular and Developmental Biology, Yale University, New Haven, CT 06511, USA.
Jason M CrawfordDepartment of Chemistry, Yale University, New Haven, CT 06520, USA; Chemical Biology Institute, Yale University, West Haven, CT 06516, USA; Department of Microbial Pathogenesis, Yale School of Medicine, New Haven, CT 06536, USA. Electronic address: jason.crawford@yale.edu.
Yale University · USMerck & Co., Inc., Rahway, NJ, USA (United States) · US

Funding

Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
PREDOCTORAL TRAINING PROGRAM IN GENETICST32GM007499 · NIGMS · YALE UNIVERSITY · PI CARLSON, JOHN R, REINKE, VALERIE J · 1985 to 2022
$13.9M
Structural and functional studies of colibactinR01CA215553 · NCI · YALE UNIVERSITY · PI Seth B. Herzon, Christian Jobin · 2018 to 2026
$5.5M
Cryptic gut bacterial metabolites that regulate colorectal cancer formationDP2CA186575 · NCI · YALE UNIVERSITY · PI CRAWFORD, JASON MICHAEL · 2013 to 2013
$2.5M
EPA EP-W-17-011NCATS NIH HHS UL1 TR001863NCI NIH HHS DP2 CA186575NCI NIH HHS R01 CA215553NIGMS NIH HHS T32 GM007499
6 · The paper itself

Abstract

Escherichia coli broadly colonize the intestinal tract of humans and produce a variety of small molecule signals. However, many of these small molecules remain unknown. Here, we describe a family of widely distributed bacterial metabolites termed the "indolokines." In E. coli, the indolokines are upregulated in response to a redox stressor via aspC and tyrB transaminases. Although indolokine 1 represents a previously unreported metabolite, four of the indolokines (2-5) were previously shown to be derived from indole-3-carbonyl nitrile (ICN) in the plant pathogen defense response. We show that the indolokines are produced in a convergent evolutionary manner relative to plants, enhance E. coli persister cell formation, outperform ICN protection in an Arabidopsis thaliana-Pseudomonas syringae infection model, trigger a hallmark plant innate immune response, and activate distinct immunological responses in primary human tissues. Our molecular studies link a family of cellular stress-induced metabolites to defensive responses across bacteria, plants, and humans.

Indexed as

Up-RegulationAnimalsArabidopsisEscherichia coliFecesHumansIndolesMiceMice, Inbred C57BLMolecular StructureOxidative StressSignal TransductionIndolesantibiotic toleranceE. colihost-bacteria interactionsIL-6indoleinnate immunitypersister cellsignalingstress response

Identifiers

PMID32243812
PMCPMC7306003
OpenAlexW3014832684

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.