Evidence map›Paper›PMID 32243652›Full record

ArticleEnvironmental and molecular mutagenesis2020

Enhancing the sensitivity of the thymidine kinase assay by using DNA repair-deficient human TK6 cells.

Mahmoud Abdelghany Ibrahim, Manabu Yasui, Liton Kumar Saha, Hiroyuki Sasanuma, Masamitsu Honma, Shunichi Takeda

Open access · hybridAbstract read
In one paragraph

Article in Environmental and molecular mutagenesis, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.2field-weighted citation impact, top 51% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 10 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Mahmoud Abdelghany IbrahimDepartment of Radiation Genetics, Kyoto University, Graduate School of Medicine, Kyoto, Japan.
Manabu YasuiDivision of Genetics and Mutagenesis, National Institute of Health Sciences, Kawasaki, Kanagawa, Japan.
Liton Kumar SahaDepartment of Radiation Genetics, Kyoto University, Graduate School of Medicine, Kyoto, Japan.
Hiroyuki SasanumaDepartment of Radiation Genetics, Kyoto University, Graduate School of Medicine, Kyoto, Japan.
Masamitsu HonmaDivision of Genetics and Mutagenesis, National Institute of Health Sciences, Kawasaki, Kanagawa, Japan.
Shunichi TakedaDepartment of Radiation Genetics, Kyoto University, Graduate School of Medicine, Kyoto, Japan.
Kyoto University · JPNational Institute of Health Sciences · JP

Funding

Japan Society for the Promotion of ScienceMinistry of Education 16H02953Ministry of Education 16H06306Ministry of Education 18H04900Ministry of Education 23221005Ministry of Education 23310133Ministry of Education 25650006Mitsubishi Foundation
6 · The paper itself

Abstract

The OECD guidelines define the bioassays of identifying mutagenic chemicals, including the thymidine kinase (TK) assay, which specifically detects the mutations that inactivate the TK gene in the human TK6 lymphoid line. However, the sensitivity of this assay is limited because it detects mutations occurring only in the TK gene but not any other genes. Moreover, the limited sensitivity of the conventional TK assay is caused by the usage of DNA repair-proficient wild-type cells, which are capable of accurately repairing DNA damage induced by chemicals. Mutagenic chemicals produce a variety of DNA lesions, including base lesions, sugar damage, crosslinks, and strand breaks. Base damage causes point mutations and is repaired by the base excision repair (BER) and nucleotide excision repair (NER) pathways. To increase the sensitivity of TK assay, we simultaneously disrupted two genes encoding XRCC1, an important BER factor, and XPA, which is essential for NER, generating XRCC1

Indexed as

Cell LineDNA DamageDNA RepairEnzyme AssaysHumansMutagenicity TestsMutagensMutation RateThymidine KinaseXeroderma Pigmentosum Group A ProteinX-ray Repair Cross Complementing Protein 1MutagensThymidine KinaseXeroderma Pigmentosum Group A ProteinXPA protein, humanX-ray Repair Cross Complementing Protein 1XRCC1 protein, humanDNA-damaging agentOECD guidelinethymidine kinase assayTK6 cellsTK assay

Identifiers

PMID32243652
PMCPMC7384079
OpenAlexW3014412871

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.