Evidence map›Paper›PMID 32242295›Full record

ArticleJournal of assisted reproduction and genetics2020

Development of a novel next-generation sequencing panel for diagnosis of quantitative spermatogenic impairment.

Maria Santa Rocca, Aichi Msaki, Marco Ghezzi, Ilaria Cosci, Kalliopi Pilichou, Rudy Celeghin, Carlo Foresta, Alberto Ferlin

Open access · greenAbstract read
In one paragraph

Article in Journal of assisted reproduction and genetics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 18 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Maria Santa RoccaDepartment of Medicine, Unit of Andrology and Reproductive Medicine, University of Padua, Via Giustiniani, 2, 35128, Padova, Italy.
Aichi MsakiDepartment of Medicine, Unit of Andrology and Reproductive Medicine, University of Padua, Via Giustiniani, 2, 35128, Padova, Italy.
Marco GhezziDepartment of Medicine, Unit of Andrology and Reproductive Medicine, University of Padua, Via Giustiniani, 2, 35128, Padova, Italy.
Ilaria CosciFamilial Cancer Clinic, Veneto Institute of Oncology (IOV-IRCCS), Padua, Italy.
Kalliopi PilichouDepartment of Cardiac-Thoracic-Vascular Sciences and Public Health, University of Padua, Padua, Italy.
Rudy CeleghinDepartment of Cardiac-Thoracic-Vascular Sciences and Public Health, University of Padua, Padua, Italy.
Carlo ForestaDepartment of Medicine, Unit of Andrology and Reproductive Medicine, University of Padua, Via Giustiniani, 2, 35128, Padova, Italy. carlo.foresta@unipd.it.
Alberto FerlinDepartment of Clinical and Experimental Sciences, University of Brescia, Brescia, Italy.
University of Padua · ITCancer Clinic · USUniversity of Brescia · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

purposeTo develop and assess a novel custom next-generation sequencing (NGS) panel for male infertility genetic diagnosis.

methodsA total of 241 subjects with diagnosis of idiopathic infertility ranging from azoospermia to normozoospermia were sequenced by a custom NGS panel including AR, FSHB, FSHR, KLHL10, NR5A1, NANOS1, SEPT12, SYCP3, TEX11 genes. Variants with minor allele frequency < 1% were confirmed by Sanger sequencing.

resultsNineteen missense variants were detected in 23 subjects with abnormal sperm count, whilst no variants were identified in normozoospermic men. Of identified variants, we prioritized variants classified as pathogenic and of uncertain significance (VUS) (63.1%, 12/19). No missense variants were found in males with normal seminal parameters (0/67). Therefore, the prevalence of variants was significantly higher in patients with spermatogenic impairment (16/174 vs 0/67, p = 0.007).

conclusionThis study confirms the utility to apply NGS panel for infertility diagnosis in order to find new genetic variants potentially linked to male infertility with much higher accuracy than standard tests suggested by guidelines. Indeed, based on biological significance, prevalence in the general population and clinical data of patients, it is plausible that identified variants in this study might be linked to quantitative spermatogenic impairment, although further studies are needed.

Indexed as

High-Throughput Nucleotide SequencingAdultAzoospermiaCell Cycle ProteinsDNA-Binding ProteinsGene FrequencyGenetic TestingHumansInfertility, MaleIntracellular Signaling Peptides and ProteinsMaleMutation, MissensePolymorphism, Single NucleotideReceptors, AndrogenReceptors, FSHRNA-Binding ProteinsAR protein, humanCell Cycle ProteinsDNA-Binding ProteinsFSHR protein, humanIntracellular Signaling Peptides and ProteinsKLHL10 protein, humanNANOS1 protein, humanNR5A1 protein, humanReceptors, AndrogenReceptors, FSHRNA-Binding ProteinsSEPTIN12 protein, humanSeptinsSteroidogenic Factor 1SYCP3 protein, humanTEX11 protein, humanDNA sequencingGene panelIdiopathic male infertilityNGS

Identifiers

PMID32242295
PMCPMC7183017
OpenAlexW3014407134

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.