Evidence map›Paper›PMID 32242144›Full record

ArticleNature communications2020

Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.

Joana A Revez, Tian Lin, Zhen Qiao, Angli Xue, Yan Holtz, Zhihong Zhu, Jian Zeng, Huanwei Wang, Julia Sidorenko, Kathryn E Kemper and 11 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 255 papers, 20 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
255citing papers in PubMed, 20 pooled it
30.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

255 citing papers in PubMed, 20 syntheses or guidelines pooled it, 441 citations in OpenAlex.

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  17. Steroid hormone pathways, vitamin D and autism: a systematic review.Journal of neural transmission (Vienna, Austria : 1996) · 2023
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195 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 3 institutions in 3 countries.

Joana A RevezInstitute for Molecular Bioscience, The University of Queensland, Brisbane, QLD, Australia.ORCID http://orcid.org/0000-0003-3204-5396
Tian LinInstitute for Molecular Bioscience, The University of Queensland, Brisbane, QLD, Australia.ORCID http://orcid.org/0000-0002-5981-1911
Zhen QiaoInstitute for Molecular Bioscience, The University of Queensland, Brisbane, QLD, Australia.
Angli XueInstitute for Molecular Bioscience, The University of Queensland, Brisbane, QLD, Australia.ORCID http://orcid.org/0000-0002-0285-0426
Yan HoltzQueensland Brain Institute, The University of Queensland, Brisbane, QLD, Australia.
Zhihong ZhuInstitute for Molecular Bioscience, The University of Queensland, Brisbane, QLD, Australia.
Jian ZengInstitute for Molecular Bioscience, The University of Queensland, Brisbane, QLD, Australia.ORCID http://orcid.org/0000-0001-8801-5220
Huanwei WangInstitute for Molecular Bioscience, The University of Queensland, Brisbane, QLD, Australia.ORCID http://orcid.org/0000-0002-6137-3391
Julia SidorenkoInstitute for Molecular Bioscience, The University of Queensland, Brisbane, QLD, Australia.ORCID http://orcid.org/0000-0003-1494-6772
Kathryn E KemperInstitute for Molecular Bioscience, The University of Queensland, Brisbane, QLD, Australia.
Anna A E VinkhuyzenInstitute for Molecular Bioscience, The University of Queensland, Brisbane, QLD, Australia.
Julanne FraterQueensland Brain Institute, The University of Queensland, Brisbane, QLD, Australia.
Darryl EylesQueensland Brain Institute, The University of Queensland, Brisbane, QLD, Australia.
Thomas H J BurneQueensland Brain Institute, The University of Queensland, Brisbane, QLD, Australia.ORCID http://orcid.org/0000-0003-3502-9789
Brittany MitchellQIMR Berghofer Medical Research Institute, Brisbane, QLD, Australia.ORCID http://orcid.org/0000-0002-9050-1516
Nicholas G MartinQIMR Berghofer Medical Research Institute, Brisbane, QLD, Australia.ORCID http://orcid.org/0000-0003-4069-8020
Gu ZhuQIMR Berghofer Medical Research Institute, Brisbane, QLD, Australia.
Peter M VisscherInstitute for Molecular Bioscience, The University of Queensland, Brisbane, QLD, Australia.ORCID http://orcid.org/0000-0002-2143-8760
Jian YangInstitute for Molecular Bioscience, The University of Queensland, Brisbane, QLD, Australia.ORCID http://orcid.org/0000-0003-2001-2474
Naomi R Wray *Institute for Molecular Bioscience, The University of Queensland, Brisbane, QLD, Australia. naomi.wray@uq.edu.au.ORCID http://orcid.org/0000-0001-7421-3357
John J McGrath *Queensland Brain Institute, The University of Queensland, Brisbane, QLD, Australia. j.mcgrath@uq.edu.au.ORCID http://orcid.org/0000-0002-4792-6068
The University of Queensland · AUQIMR Berghofer Medical Research Institute · AUQueensland University of Technology · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Vitamin D deficiency is a candidate risk factor for a range of adverse health outcomes. In a genome-wide association study of 25 hydroxyvitamin D (25OHD) concentration in 417,580 Europeans we identify 143 independent loci in 112 1-Mb regions, providing insights into the physiology of vitamin D and implicating genes involved in lipid and lipoprotein metabolism, dermal tissue properties, and the sulphonation and glucuronidation of 25OHD. Mendelian randomization models find no robust evidence that 25OHD concentration has causal effects on candidate phenotypes (e.g. BMI, psychiatric disorders), but many phenotypes have (direct or indirect) causal effects on 25OHD concentration, clarifying the epidemiological relationship between 25OHD status and the health outcomes examined in this study.

Indexed as

AdultAgedFemaleGenome-Wide Association StudyHumansMaleMendelian Randomization AnalysisMiddle AgedPolymorphism, Single NucleotideUnited KingdomVitamin DVitamin D DeficiencyWhite People25-hydroxyvitamin DVitamin D

Identifiers

PMID32242144
PMCPMC7118120
OpenAlexW3014565260

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.