Evidence map›Paper›PMID 32242064›Full record

ArticleScientific reports2020

Conditional down-regulation of GreA impacts expression of rRNA and transcription factors, affecting Mycobacterium smegmatis survival.

Rajiv Kumar Jha, Shubha Udupa, Ashutosh Kumar Rai, Phoolwanti Rani, Prakruti R Singh, Shamitha Govind, Valakunja Nagaraja

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Review
  3. Structure of co-expression networks ofFrontiers in molecular biosciences · 2023
    Article
  4. Article
  5. Review
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Rajiv Kumar Jha *Department of Microbiology and Cell Biology, Indian Institute of Science, Bangalore, 560 012, India.
Shubha Udupa *Department of Microbiology and Cell Biology, Indian Institute of Science, Bangalore, 560 012, India.
Ashutosh Kumar RaiDepartment of Microbiology and Cell Biology, Indian Institute of Science, Bangalore, 560 012, India.
Phoolwanti RaniDepartment of Microbiology and Cell Biology, Indian Institute of Science, Bangalore, 560 012, India.
Prakruti R SinghDepartment of Microbiology and Cell Biology, Indian Institute of Science, Bangalore, 560 012, India.
Shamitha GovindDepartment of Microbiology and Cell Biology, Indian Institute of Science, Bangalore, 560 012, India.
Valakunja NagarajaDepartment of Microbiology and Cell Biology, Indian Institute of Science, Bangalore, 560 012, India. vraj@iisc.ac.in.
Indian Institute of Science Bangalore · INJawaharlal Nehru Centre for Advanced Scientific Research · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Gre, one of the conserved transcription factors in bacteria, modulates RNA polymerase (RNAP) activity to ensure processivity and fidelity of RNA synthesis. Gre factors regulate transcription by inducing the intrinsic-endonucleolytic activity of RNAP, allowing the enzyme to resume transcription from the paused and arrested sites. While Escherichia coli and a number of eubacteria harbor GreA and GreB, genus mycobacteria has a single Gre (GreA). To address the importance of the GreA in growth, physiology and gene expression of Mycobacterium smegmatis, we have constructed a conditional knock-down strain of GreA. The GreA depleted strain exhibited slow growth, drastic changes in cell surface phenotype, cell death, and increased susceptibility to front-line anti-tubercular drugs. Transcripts and 2D-gel electrophoresis (2D-PAGE) analysis of the GreA conditional knock-down strain showed altered expression of the genes involved in transcription regulation. Among the genes analysed, expression of RNAP subunits (β, β' and ω), carD, hupB, lsr2, and nusA were affected to a large extent. Severe reduction in the expression of genes of rRNA operon in the knock-down strain reveal a role for GreA in regulating the core components of the translation process.

Indexed as

Gene Expression Regulation, BacterialBacterial ProteinsDNA-Directed RNA PolymerasesDown-RegulationMycobacterium smegmatisOperonRNA, RibosomalTranscription FactorsBacterial ProteinsDNA-Directed RNA PolymerasesRNA, RibosomalTranscription Factors

Identifiers

PMID32242064
PMCPMC7118132
OpenAlexW3014244194

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.