Evidence map›Paper›PMID 32242051›Full record

ArticleLeukemia2021

H3K79me2/3 controls enhancer-promoter interactions and activation of the pan-cancer stem cell marker PROM1/CD133 in MLL-AF4 leukemia cells.

Laura Godfrey, Nicholas T Crump, Sorcha O'Byrne, I-Jun Lau, Siobhan Rice, Joe R Harman, Thomas Jackson, Natalina Elliott, Gemma Buck, Christopher Connor and 11 more

Open access · hybridAbstract read
In one paragraph

Article in Leukemia, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
3.0field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 66 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Epigenetic regulation of cancer stemness.Signal transduction and targeted therapy · 2025
    Review
  8. Discovery of the first-in-class DOT1L PROTAC degrader.European journal of medicinal chemistry · 2025
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. Aberrant stem cell and developmental programs in pediatric leukemia.Frontiers in cell and developmental biology · 2024
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 5 institutions in 4 countries.

Laura Godfrey *MRC Molecular Haematology Unit, MRC Weatherall Institute of Molecular Medicine, NIHR Oxford Biomedical Research Centre Haematology Theme, Radcliffe Department of Medicine, University of Oxford, Oxford, UK.
Nicholas T Crump *MRC Molecular Haematology Unit, MRC Weatherall Institute of Molecular Medicine, NIHR Oxford Biomedical Research Centre Haematology Theme, Radcliffe Department of Medicine, University of Oxford, Oxford, UK.ORCID http://orcid.org/0000-0001-9610-6763
Sorcha O'ByrneDepartment of Paediatrics, University of Oxford, Oxford, UK.
I-Jun LauMRC Molecular Haematology Unit, MRC Weatherall Institute of Molecular Medicine, NIHR Oxford Biomedical Research Centre Haematology Theme, Radcliffe Department of Medicine, University of Oxford, Oxford, UK.
Siobhan RiceMRC Molecular Haematology Unit, MRC Weatherall Institute of Molecular Medicine, NIHR Oxford Biomedical Research Centre Haematology Theme, Radcliffe Department of Medicine, University of Oxford, Oxford, UK.
Joe R HarmanMRC Molecular Haematology Unit, MRC Weatherall Institute of Molecular Medicine, NIHR Oxford Biomedical Research Centre Haematology Theme, Radcliffe Department of Medicine, University of Oxford, Oxford, UK.
Thomas JacksonDepartment of Paediatrics, University of Oxford, Oxford, UK.
Natalina ElliottDepartment of Paediatrics, University of Oxford, Oxford, UK.
Gemma BuckDepartment of Paediatrics, University of Oxford, Oxford, UK.
Christopher ConnorGreat Ormond Street Hospital for Children, London, UK.
Ross ThorneMRC Molecular Haematology Unit, MRC Weatherall Institute of Molecular Medicine, NIHR Oxford Biomedical Research Centre Haematology Theme, Radcliffe Department of Medicine, University of Oxford, Oxford, UK.
David J H F KnappMRC Weatherall Institute of Molecular Medicine, Radcliffe Department of Medicine, University of Oxford, Oxford, UK.
Olaf HeidenreichPrincess Maxima Centrum for Pediatric Oncology, Utrecht, The Netherlands.ORCID http://orcid.org/0000-0001-5404-6483
Paresh VyasMRC Molecular Haematology Unit, MRC Weatherall Institute of Molecular Medicine, NIHR Oxford Biomedical Research Centre Haematology Theme, Radcliffe Department of Medicine, University of Oxford, Oxford, UK.ORCID http://orcid.org/0000-0003-3931-0914
Pablo MenendezJosep Carreras Leukemia Research Institute, Barcelona, Spain.
Sarah InglottGreat Ormond Street Hospital for Children, London, UK.
Philip AncliffGreat Ormond Street Hospital for Children, London, UK.
Huimin GengDepartment of Laboratory Medicine, University of California, San Francisco, San Francisco, CA, 94143, USA.
Irene RobertsMRC Molecular Haematology Unit, MRC Weatherall Institute of Molecular Medicine, NIHR Oxford Biomedical Research Centre Haematology Theme, Radcliffe Department of Medicine, University of Oxford, Oxford, UK.
Anindita RoyDepartment of Paediatrics, University of Oxford, Oxford, UK. anindita.roy@paediatrics.ox.ac.uk.
Thomas A MilneMRC Molecular Haematology Unit, MRC Weatherall Institute of Molecular Medicine, NIHR Oxford Biomedical Research Centre Haematology Theme, Radcliffe Department of Medicine, University of Oxford, Oxford, UK. thomas.milne@imm.ox.ac.uk.ORCID http://orcid.org/0000-0002-0413-4271
University of Oxford · GBGreat Ormond Street Hospital · GBInstitució Catalana de Recerca i Estudis Avançats · ESPrincess Máxima Center · NLUniversity of California, San Francisco · US

Funding

CIHRDepartment of HealthMedical Research Council G0902418Medical Research Council G1000729Medical Research Council MC_U137961146Medical Research Council MC_UU_00016/11Medical Research Council MC_UU_00016/6Medical Research Council MC_UU_12009Medical Research Council MC_UU_12009/11Medical Research Council MC_UU_12009/14Medical Research Council MC_UU_12009/6Medical Research Council MC_UU_12025Medical Research Council MR/L008963/1Medical Research Council MR/M003221/1Medical Research Council MR/R006237/1Wellcome Trust 090532/Z/09/ZWellcome Trust 099175/Z/12/ZWellcome Trust 216632Wellcome Trust 216632/Z/19/Z
6 · The paper itself

Abstract

MLL gene rearrangements (MLLr) are a common cause of aggressive, incurable acute lymphoblastic leukemias (ALL) in infants and children, most of which originate in utero. The most common MLLr produces an MLL-AF4 fusion protein. MLL-AF4 promotes leukemogenesis by activating key target genes, mainly through recruitment of DOT1L and increased histone H3 lysine-79 methylation (H3K79me2/3). One key MLL-AF4 target gene is PROM1, which encodes CD133 (Prominin-1). CD133 is a pentaspan transmembrane glycoprotein that represents a potential pan-cancer target as it is found on multiple cancer stem cells. Here we demonstrate that aberrant PROM1/CD133 expression is essential for leukemic cell growth, mediated by direct binding of MLL-AF4. Activation is controlled by an intragenic H3K79me2/3 enhancer element (KEE) leading to increased enhancer-promoter interactions between PROM1 and the nearby gene TAPT1. This dual locus regulation is reflected in a strong correlation of expression in leukemia. We find that in PROM1/CD133 non-expressing cells, the PROM1 locus is repressed by polycomb repressive complex 2 (PRC2) binding, associated with reduced expression of TAPT1, partially due to loss of interactions with the PROM1 locus. Together, these results provide the first detailed analysis of PROM1/CD133 regulation that explains CD133 expression in MLLr ALL.

Indexed as

Enhancer Elements, GeneticGene Expression Regulation, LeukemicPromoter Regions, GeneticAC133 AntigenBiomarkers, TumorCell Line, TumorCell Transformation, NeoplasticGene SilencingHistonesHumansImmunophenotypingLeukemiaModels, BiologicalMyeloid-Lymphoid Leukemia ProteinNeoplastic Stem CellsOncogene Proteins, FusionAC133 AntigenBiomarkers, TumorHistonesMLL-AF4 fusion protein, humanMyeloid-Lymphoid Leukemia ProteinOncogene Proteins, FusionPROM1 protein, human

Identifiers

PMID32242051
PMCPMC7787973
OpenAlexW3014563464

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.