Evidence map›Paper›PMID 32241946›Full record

ArticleScience (New York, N.Y.)2020

De novo design of protein logic gates.

Zibo Chen, Ryan D Kibler, Andrew Hunt, Florian Busch, Jocelynn Pearl, Mengxuan Jia, Zachary L VanAernum, Basile I M Wicky, Galen Dods, Hanna Liao and 9 more

Open access · greenAbstract read
In one paragraph

Article in Science (New York, N.Y.), 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 111 papers.

0numbers the graph read from it
0cells of the map it votes in
111citing papers in PubMed
12.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

111 citing papers in PubMed, 219 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Programming DNA machines to move.Nature reviews. Chemistry · 2026
    Review
  6. Programmable nanobody circuits for cell selection.bioRxiv : the preprint server for biology · 2026
    Article
  7. Review
  8. Article
  9. Article
  10. Review
  11. Review
  12. Article
  13. Article
  14. Gene circuit-based sensors.Fundamental research · 2025
    Review
  15. Article
  16. Article
  17. Article
  18. Review
  19. Why cellular computations challenge our design principles.Seminars in cell & developmental biology · 2025
    Review
  20. Review

51 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

19 authors at 6 institutions in 1 country.

Zibo ChenDepartment of Biochemistry, University of Washington, Seattle, WA 98195, USA.ORCID 0000-0003-2990-2895
Ryan D KiblerDepartment of Biochemistry, University of Washington, Seattle, WA 98195, USA.ORCID 0000-0001-6984-9887
Andrew HuntDepartment of Chemical and Biological Engineering, Northwestern University, Evanston, IL 60208, USA.ORCID 0000-0001-9620-593X
Florian BuschDepartment of Chemistry and Biochemistry, The Ohio State University, Columbus, OH 43210, USA.ORCID 0000-0002-4324-6065
Jocelynn PearlAltius Institute for Biomedical Sciences, Seattle, WA 98195, USA.
Mengxuan JiaDepartment of Chemistry and Biochemistry, The Ohio State University, Columbus, OH 43210, USA.ORCID 0000-0001-9173-1084
Zachary L VanAernumDepartment of Chemistry and Biochemistry, The Ohio State University, Columbus, OH 43210, USA.ORCID 0000-0002-0956-3956
Basile I M WickyDepartment of Biochemistry, University of Washington, Seattle, WA 98195, USA.ORCID 0000-0002-2501-7875
Galen DodsDepartment of Biochemistry and Biophysics, University of California, San Francisco, San Francisco, CA 94158, USA.ORCID 0000-0001-5512-835X
Hanna LiaoAltius Institute for Biomedical Sciences, Seattle, WA 98195, USA.ORCID 0000-0003-4890-7990
Matthew S WilkenAltius Institute for Biomedical Sciences, Seattle, WA 98195, USA.
Christie CiarloAltius Institute for Biomedical Sciences, Seattle, WA 98195, USA.
Shon GreenAltius Institute for Biomedical Sciences, Seattle, WA 98195, USA.
Hana El-SamadDepartment of Biochemistry and Biophysics, University of California, San Francisco, San Francisco, CA 94158, USA.ORCID 0000-0001-6239-9916
John StamatoyannopoulosAltius Institute for Biomedical Sciences, Seattle, WA 98195, USA.ORCID 0000-0002-2664-5769
Vicki H WysockiDepartment of Chemistry and Biochemistry, The Ohio State University, Columbus, OH 43210, USA.ORCID 0000-0003-0495-2538
Michael C JewettDepartment of Chemical and Biological Engineering, Northwestern University, Evanston, IL 60208, USA.ORCID 0000-0003-2948-6211
Scott E BoykenDepartment of Biochemistry, University of Washington, Seattle, WA 98195, USA.ORCID 0000-0002-5378-0632
David BakerDepartment of Biochemistry, University of Washington, Seattle, WA 98195, USA. dabaker@uw.edu.ORCID 0000-0001-7896-6217
Altius Institute for Biomedical Sciences · USUniversity of Washington · USThe Ohio State University · USNorthwestern University · USUniversity of California, San Francisco · USHoward Hughes Medical Institute · US

Funding

Transcription-Coupled & Replication-Associated Excision RepairP01CA092584 · NCI · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI John A. Tainer · 2001 to 2026
$89.6M
User Training and OutreachP30GM124169 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI PAUL David ADAMS, Gregory L Hura · 2017 to 2026
$28.6M
TrainingP41GM103533 · NIGMS · UNIVERSITY OF WASHINGTON · PI MACCOSS, MICHAEL · 2012 to 2021
$20.7M
Waters Select Series Cyclic IMS for P41 Native MS Resource Application to Alzheimer's DiseaseP41GM128577 · NIGMS · OHIO STATE UNIVERSITY · PI SOMOGYI, ARPAD · 2018 to 2022
$7.6M
Functional characterization of blood cell associated regulatory GWAS hitsR33HL120752 · NHLBI · ALTIUS INSTITUTE FOR BIOMEDICAL SCIENCES · PI STAMATOYANNOPOULOS, JOHN A · 2016 to 2018
$1.1M
A Pixel Array Detector System for Small Angle X-ray ScatteringS10OD018483 · OD · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI CLASSEN, SCOTT · 2014 to 2014
$998k
Howard Hughes Medical InstituteNCI NIH HHS P01 CA092584NHLBI NIH HHS R33 HL120752NIGMS NIH HHS P30 GM124169NIGMS NIH HHS P41 GM103533NIGMS NIH HHS P41 GM128577NIH HHS S10 OD018483
6 · The paper itself

Abstract

The design of modular protein logic for regulating protein function at the posttranscriptional level is a challenge for synthetic biology. Here, we describe the design of two-input AND, OR, NAND, NOR, XNOR, and NOT gates built from de novo-designed proteins. These gates regulate the association of arbitrary protein units ranging from split enzymes to transcriptional machinery in vitro, in yeast and in primary human T cells, where they control the expression of the

Indexed as

Protein EngineeringProtein Interaction MapsProtein Processing, Post-TranslationalHepatitis A Virus Cellular Receptor 2HumansLogicMass SpectrometrySynthetic BiologyT-LymphocytesTranscription, GeneticYeastsHAVCR2 protein, humanHepatitis A Virus Cellular Receptor 2

Identifiers

PMID32241946
PMCPMC7397813
OpenAlexW3014096229

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.