Evidence map›Paper›PMID 32241287›Full record

ArticleMicrobiome2020

Structure and function of the Arctic and Antarctic marine microbiota as revealed by metagenomics.

Shunan Cao, Weipeng Zhang, Wei Ding, Meng Wang, Shen Fan, Bo Yang, Andrew Mcminn, Min Wang, Bin-Bin Xie, Qi-Long Qin and 3 more

Erratum issuedOpen access · goldAbstract readVideo-Audio Media
In one paragraph

Article in Microbiome, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 73 papers.

0numbers the graph read from it
0cells of the map it votes in
73citing papers in PubMed
11.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

73 citing papers in PubMed, 114 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

13 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 1 country.

Shunan CaoThe Key Laboratory for Polar Science MNR, Polar Research Institute of China, Shanghai, 200136, China.
Weipeng ZhangCollege of Marine Life Science, Frontiers Science Center for Deep Ocean Multispheres and Earth System, Ocean University of China, Qingdao, 266003, China.
Wei DingState Key Laboratory of Microbial Technology, and Marine Biotechnology Research Center, Shandong University, Qingdao, 266237, China.
Meng WangCollege of Marine Life Science, Frontiers Science Center for Deep Ocean Multispheres and Earth System, Ocean University of China, Qingdao, 266003, China.
Shen FanCollege of Marine Life Science, Frontiers Science Center for Deep Ocean Multispheres and Earth System, Ocean University of China, Qingdao, 266003, China.
Bo YangCollege of Marine Life Science, Frontiers Science Center for Deep Ocean Multispheres and Earth System, Ocean University of China, Qingdao, 266003, China.
Andrew McminnCollege of Marine Life Science, Frontiers Science Center for Deep Ocean Multispheres and Earth System, Ocean University of China, Qingdao, 266003, China.
Min WangCollege of Marine Life Science, Frontiers Science Center for Deep Ocean Multispheres and Earth System, Ocean University of China, Qingdao, 266003, China.
Bin-Bin XieState Key Laboratory of Microbial Technology, and Marine Biotechnology Research Center, Shandong University, Qingdao, 266237, China.
Qi-Long QinState Key Laboratory of Microbial Technology, and Marine Biotechnology Research Center, Shandong University, Qingdao, 266237, China.
Xiu-Lan ChenState Key Laboratory of Microbial Technology, and Marine Biotechnology Research Center, Shandong University, Qingdao, 266237, China.
Jianfeng HeThe Key Laboratory for Polar Science MNR, Polar Research Institute of China, Shanghai, 200136, China. hejianfeng@pric.org.cn.
Yu-Zhong ZhangCollege of Marine Life Science, Frontiers Science Center for Deep Ocean Multispheres and Earth System, Ocean University of China, Qingdao, 266003, China. zhangyuzhong6830@ouc.edu.cn.
Ocean University of China · CNShandong University · CNPolar Research Institute of China · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe Arctic and Antarctic are the two most geographically distant bioregions on earth. Recent sampling efforts and following metagenomics have shed light on the global ocean microbial diversity and function, yet the microbiota of polar regions has not been included in such global analyses.

resultsHere a metagenomic study of seawater samples (n = 60) collected from different depths at 28 locations in the Arctic and Antarctic zones was performed, together with metagenomes from the Tara Oceans. More than 7500 (19%) polar seawater-derived operational taxonomic units could not be identified in the Tara Oceans datasets, and more than 3,900,000 protein-coding gene orthologs had no hits in the Ocean Microbial Reference Gene Catalog. Analysis of 214 metagenome assembled genomes (MAGs) recovered from the polar seawater microbiomes, revealed strains that are prevalent in the polar regions while nearly undetectable in temperate seawater. Metabolic pathway reconstruction for these microbes suggested versatility for saccharide and lipids biosynthesis, nitrate and sulfate reduction, and CO

conclusionsOur data highlight the occurrence of dominant and locally enriched microbes in the Arctic and Antarctic seawater with unique functional traits for environmental adaption, and provide a foundation for analyzing the global ocean microbiome in a more complete perspective. Video abstract.

Indexed as

MetagenomicsAntarctic RegionsArctic RegionsBacteriaMicrobiotaOceans and SeasPhylogenySeawaterArctic and Antarctic zonesEnvironmental adaptationGlobal ocean microbiome

Identifiers

PMID32241287
PMCPMC7119284
OpenAlexW3014465808

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.