Evidence map›Paper›PMID 32240714›Full record

ArticleJournal of hepatology2020

Epigenetic footprint enables molecular risk stratification of hepatoblastoma with clinical implications.

Juan Carrillo-Reixach, Laura Torrens, Marina Simon-Coma, Laura Royo, Montserrat Domingo-Sàbat, Jordi Abril-Fornaguera, Nicholas Akers, Margarita Sala, Sonia Ragull, Magdalena Arnal and 47 more

Open access · greenAbstract read
In one paragraph

Article in Journal of hepatology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 91 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
91citing papers in PubMed, 2 pooled it
6.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

91 citing papers in PubMed, 2 syntheses or guidelines pooled it, 140 citations in OpenAlex.

  1. Pooled it
  2. Multiancestry Transcriptome-Wide Association Study Identifies Candidate Genes Associated with Hepatoblastoma.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2025
    Pooled it
  3. Article
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  5. Differential Wnt/β-catenin signaling via TCF7L2/LEF1 binding specificity shapes cellular and tumor phenotypes.Proceedings of the National Academy of Sciences of the United States of America · 2026
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  10. Trefoil Factor-3 Is a Hypoxia-Triggered Pro-Tumorigenic Factor in Hepatoblastoma.Liver international : official journal of the International Association for the Study of the Liver · 2026
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31 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

57 authors at 20 institutions in 10 countries.

Juan Carrillo-ReixachChildhood Liver Oncology Group, Germans Trias i Pujol Research Institute (IGTP), Program for Predictive and Personalized Medicine of Cancer (PMPPC), Badalona, Spain.
Laura TorrensMount Sinai Liver Cancer Program, Divisions of Liver Diseases, Tisch Cancer Institute, Icahn School of Medicine at Mount Sinai, New York, USA; Translational research in Hepatic Oncology, Liver Unit, Institut d'Investigacions Biomèdiques August Pi i Sunyer (IDIBAPS), Hospital Clínic, Universitat de Barcelona, Barcelona, Spain.
Marina Simon-ComaChildhood Liver Oncology Group, Germans Trias i Pujol Research Institute (IGTP), Program for Predictive and Personalized Medicine of Cancer (PMPPC), Badalona, Spain; CIBER, Hepatic and Digestive Diseases, Barcelona, Spain.
Laura RoyoChildhood Liver Oncology Group, Germans Trias i Pujol Research Institute (IGTP), Program for Predictive and Personalized Medicine of Cancer (PMPPC), Badalona, Spain.
Montserrat Domingo-SàbatChildhood Liver Oncology Group, Germans Trias i Pujol Research Institute (IGTP), Program for Predictive and Personalized Medicine of Cancer (PMPPC), Badalona, Spain.
Jordi Abril-FornagueraMount Sinai Liver Cancer Program, Divisions of Liver Diseases, Tisch Cancer Institute, Icahn School of Medicine at Mount Sinai, New York, USA; Translational research in Hepatic Oncology, Liver Unit, Institut d'Investigacions Biomèdiques August Pi i Sunyer (IDIBAPS), Hospital Clínic, Universitat de Barcelona, Barcelona, Spain.
Nicholas AkersTranslational research in Hepatic Oncology, Liver Unit, Institut d'Investigacions Biomèdiques August Pi i Sunyer (IDIBAPS), Hospital Clínic, Universitat de Barcelona, Barcelona, Spain; Department of Genetics and Genomic Sciences, The Icahn Institute for Genomics and Multiscale Biology, Icahn School of Medicine at Mount Sinai, New York, USA.
Margarita SalaCIBER, Hepatic and Digestive Diseases, Barcelona, Spain; Gastroenterology Department, Hospital Universitari Germans Trias i Pujol Hospital, Badalona, Spain; Gastroenterology Department, Hospital Universitari Josep Trueta, Girona, Spain.
Sonia RagullChildhood Liver Oncology Group, Germans Trias i Pujol Research Institute (IGTP), Program for Predictive and Personalized Medicine of Cancer (PMPPC), Badalona, Spain.
Magdalena ArnalMARGenomics, IMIM (Hospital del Mar Medical Research Institute), Barcelona, Spain.
Núria VillalmanzoPMPPC, IGTP, Badalona, Spain.
Stefano CairoXenTech, Evry, France; Instituto di Ricerca Pediatrica, Corso Stati Uniti 4, Padova, Italy.
Alberto VillanuevaChemoresistance and Predictive Factors Group, Program Against Cancer Therapeutic Resistance, Catalan Institute of Oncology (ICO), Bellvitge Biomedical Research Institute, L'Hospitalet del Llobregat, Barcelona, Spain.
Roland KapplerDepartment of Pediatric Surgery, Dr. von Hauner Children's Hospital, Ludwig-Maximilians-University Munich, Lindwurmstr. 2a, 80337 Munich, Germany.
Marta GarridoHospital Vall d'Hebron, Pathology Department, Barcelona, Spain.
Laura GuerraUniversity Hospital La Paz, Pathology Department, Madrid, Spain.
Constantino SábadoHospital Vall d'Hebron, Pediatric Oncology Department, Barcelona, Spain.
Gabriela GuillénHospital Vall d'Hebron, Pediatric Surgery Department, Barcelona, Spain.
Mar MalloMDS Research Group, Josep Carreras Leukaemia Research Institute, ICO-Hospital Germans Trias i Pujol, Universitat Autònoma de Barcelona, Badalona, Spain.
David PiñeyroHigh Content Genomics and Bioinformatics Unit, PMPPC, IGTP, Badalona, Spain.
María Vázquez-VitaliChildhood Liver Oncology Group, Germans Trias i Pujol Research Institute (IGTP), Program for Predictive and Personalized Medicine of Cancer (PMPPC), Badalona, Spain.
Olga KuchukMount Sinai Liver Cancer Program, Divisions of Liver Diseases, Tisch Cancer Institute, Icahn School of Medicine at Mount Sinai, New York, USA.
María Elena MateosPediatric Oncology Unit, Department of Pediatrics, University Hospital Reina Sofía, Córdoba, Spain.
Gema RamírezUniversity Hospital Universitario Virgen del Rocío, Pediatric Oncology Department, Sevilla, Spain.
Manuel López SantamaríaUniversity Hospital La Paz, Pediatric Surgery Department, Madrid, Spain.
Yasmina MozoUniversity Hospital La Paz, Pediatric Oncology Department, Madrid, Spain.
Aroa SorianoBiomedical Research in Cancer Stem Cells Group, Pathology Department, Institut de Recerca Hospital Vall d'Hebron (VHIR), Barcelona, Spain.
Michael GrotzerDepartment of Pediatric Oncology, University Children's Hospital Zurich, University of Zurich, Zurich, Switzerland.
Sophie BranchereauBicêtre Hospital, Le Kremlin-Bicêtre, France.
Nagore García de AndoinPediatric Oncology, Hospital Universitario Donostia, Doctor Begiristain Kalea, 117, 20080, Donostia, Spain.
Blanca López-IborDepartment of Pediatric Hematology and Oncology, HM Montepríncipe Hospital, Boadilla del Monte, Madrid, Spain.
Ricardo López-AlmarazPediatric Oncology and Hematology, Hospital Universitario Cruces, Bilbao, Spain.
José Antonio SalinasDivision of Hematology-Oncology, Department of Pediatrics, Hospital Universitari Son Espases, Palma de Mallorca, Spain.
Bárbara TorresMedical Oncology Department, Pediatric Oncology Department, University Hospital La Fe, Valencia, Spain.
Francisco HernándezUniversity Hospital La Paz, Pediatric Surgery Department, Madrid, Spain.
José Javier UrizPediatric Oncology, Hospital Universitario Donostia, Doctor Begiristain Kalea, 117, 20080, Donostia, Spain.
Monique FabreDepartment of Pathology, Hôpital Universitaire Necker-Enfants Malades, Assistance Publique-Hôpitaux de Paris, and Université Paris Descartes, Paris, France.
Julià BlancoIrsiCaixa AIDS Research Institute, IGTP, Badalona, Catalonia, Spain; University of Vic - Central University of Catalonia, Vic, Spain.
Claudia ParisStem Cell Transplant Unit, Hospital Luis Calvo Mackenna, Santiago, Chile.
Viera BajčiováDepartment of Pediatric Oncology, Childrens University Hospital Brno, Brno, Czech.
Geneviève LaureysDepartment of Pediatric Hematology, Oncology and Hematopoietic Stem Cell Transplantation, Ghent University Hospital, Ghent, Belgium.
Helena MasnouGastroenterology Department, Hospital Universitari Germans Trias i Pujol Hospital, Badalona, Spain.
Ariadna ClosGastroenterology Department, Hospital Universitari Germans Trias i Pujol Hospital, Badalona, Spain.
Cristina BelendezOncohematology Service, Hospital Gregorio Marañón, Madrid, Spain.
Catherine GuettierBicêtre Hospital, Le Kremlin-Bicêtre, France.
Lauro SumoyHigh Content Genomics and Bioinformatics Unit, PMPPC, IGTP, Badalona, Spain.
Ramón PlanasCIBER, Hepatic and Digestive Diseases, Barcelona, Spain; Gastroenterology Department, Hospital Universitari Germans Trias i Pujol Hospital, Badalona, Spain.
Mireia JordàPMPPC, IGTP, Badalona, Spain; Consortium for the Study of Thyroid Cancer, CECaT, Barcelona, Spain.
Lara NonellMARGenomics, IMIM (Hospital del Mar Medical Research Institute), Barcelona, Spain.
Piotr CzaudernaDepartment of Surgery and Urology for Children and Adolescents, Medical University of Gdansk, Gdansk, Poland.
Bruce MorlandDepartment of Oncology, Birmingham Women's and Children's Hospital, Birmingham, UK.
Daniela SiaMount Sinai Liver Cancer Program, Divisions of Liver Diseases, Tisch Cancer Institute, Icahn School of Medicine at Mount Sinai, New York, USA.
Bojan LosicDepartment of Genetics and Genomic Sciences, The Icahn Institute for Genomics and Multiscale Biology, Icahn School of Medicine at Mount Sinai, New York, USA; Graduate School of Biomedical Sciences, One Gustave L. Levy Place, Box 1022, New York, NY; Tisch Cancer Institute, Cancer Immunology Program, Icahn School of Medicine at Mount Sinai, New York, NY; Icahn Institute for Data Science and Genomic Technology, Icahn School of Medicine at Mount Sinai, New York, NY.
Marie Annick BuendiaINSERM, UMR 1193, Paul-Brousse Hospital, Hepatobiliary Centre, Villejuif, France.
Maria Rosa SarriasCIBER, Hepatic and Digestive Diseases, Barcelona, Spain; Innate Immunity Group, IGTP, Badalona, Spain.
Josep M LlovetMount Sinai Liver Cancer Program, Divisions of Liver Diseases, Tisch Cancer Institute, Icahn School of Medicine at Mount Sinai, New York, USA; Translational research in Hepatic Oncology, Liver Unit, Institut d'Investigacions Biomèdiques August Pi i Sunyer (IDIBAPS), Hospital Clínic, Universitat de Barcelona, Barcelona, Spain; Institució Catalana de Recerca i Estudis Avançats (ICREA), Barcelona, Spain.
Carolina ArmengolChildhood Liver Oncology Group, Germans Trias i Pujol Research Institute (IGTP), Program for Predictive and Personalized Medicine of Cancer (PMPPC), Badalona, Spain; CIBER, Hepatic and Digestive Diseases, Barcelona, Spain. Electronic address: carmengol@igtp.cat.
Institute of Predictive and Personalized Medicine of Cancer · ESCentro de Investigación Biomédica en Red de Enfermedades Hepáticas y Digestivas · ESHospital Universitario La Paz · ESIcahn School of Medicine at Mount Sinai · USVall d'Hebron Hospital Universitari · ESBicêtre Hospital · FRConsorci Institut D'Investigacions Biomediques August Pi I Sunyer · ESHospital Universitari Germans Trias i Pujol · ESGdańsk Medical University · PLGhent University Hospital · BEHospital de Cruces · ESHospital Del Mar · ESHospital General Universitario Gregorio Marañón · ESHospital Luis Calvo Mackenna · CLHospital Universitari i Politècnic La Fe · ESHospital Universitario Reina Sofía · ESHospital Universitario Son Espases · ESHospital Universitario Virgen del Rocío · ESInserm · FRInstitut Català d'Oncologia · ES

Funding

THE TISCH CANCER INSTITUTE - CANCER CENTER SUPPORT GRANTP30CA196521 · NCI · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI Ramon E Parsons · 2015 to 2026
$35.4M
Cancer Research UK 26813Cancer Research UK C9380/A26813NCI NIH HHS P30 CA196521
6 · The paper itself

Abstract

BACKGROUND &

aimsHepatoblastoma (HB) is a rare disease. Nevertheless, it is the predominant pediatric liver cancer, with limited therapeutic options for patients with aggressive tumors. Herein, we aimed to uncover the mechanisms of HB pathobiology and to identify new biomarkers and therapeutic targets in a move towards precision medicine for patients with advanced HB.

methodsWe performed a comprehensive genomic, transcriptomic and epigenomic characterization of 159 clinically annotated samples from 113 patients with HB, using high-throughput technologies.

resultsWe discovered a widespread epigenetic footprint of HB that includes hyperediting of the tumor suppressor BLCAP concomitant with a genome-wide dysregulation of RNA editing and the overexpression of mainly non-coding genes of the oncogenic 14q32 DLK1-DIO3 locus. By unsupervised analysis, we identified 2 epigenomic clusters (Epi-CA, Epi-CB) with distinct degrees of DNA hypomethylation and CpG island hypermethylation that are associated with the C1/C2/C2B transcriptomic subtypes. Based on these findings, we defined the first molecular risk stratification of HB (MRS-HB), which encompasses 3 main prognostic categories and improves the current clinical risk stratification approach. The MRS-3 category (28%), defined by strong 14q32 locus expression and Epi-CB methylation features, was characterized by CTNNB1 and NFE2L2 mutations, a progenitor-like phenotype and clinical aggressiveness. Finally, we identified choline kinase alpha as a promising therapeutic target for intermediate and high-risk HBs, as its inhibition in HB cell lines and patient-derived xenografts strongly abrogated tumor growth.

conclusionsThese findings provide a detailed insight into the molecular features of HB and could be used to improve current clinical stratification approaches and to develop treatments for patients with HB. LAY SUMMARY: Hepatoblastoma is a rare childhood liver cancer that has been understudied. We have used cutting-edge technologies to expand our molecular knowledge of this cancer. Our biological findings can be used to improve clinical management and pave the way for the development of novel therapies for this cancer.

Indexed as

Choline KinaseHepatoblastomaLiver Neoplasmsbeta CateninBiomarkers, TumorCalcium-Binding ProteinsDNA MethylationDrug DiscoveryEpigenesis, GeneticFemaleGene Expression ProfilingHigh-Throughput Screening AssaysHumansInfantMaleMembrane Proteinsbeta CateninBiomarkers, TumorBLCAP protein, humanCalcium-Binding ProteinsCHKA protein, humanCholine KinaseCTNNB1 protein, humanDLK1 protein, humanMembrane ProteinsNeoplasm Proteins14q32BLCAPCHKADLK1-DIO3 locusHepatoblastoma (HB)Molecular risk stratificationPrognostic biomarkerRNA editing

Identifiers

PMID32240714
PMCPMC12452110
OpenAlexW3014801075

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.