Evidence map›Paper›PMID 32239666›Full record

ArticleMicrobiologyOpen2020

Porcine deltacoronavirus infection alters bacterial communities in the colon and feces of neonatal piglets.

Hai-Yan Li, Bing-Xiao Li, Qing-Qing Liang, Xiao-Hui Jin, Lei Tang, Qing-Wen Ding, Zhi-Xiang Wang, Zhan-Yong Wei

Open access · goldAbstract read
In one paragraph

Article in MicrobiologyOpen, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
0.3field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 27 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Hai-Yan LiCollege of Animal Science and Veterinary Medicine, Henan Agricultural University, Zhengzhou, China.
Bing-Xiao LiCollege of Animal Science and Veterinary Medicine, Henan Agricultural University, Zhengzhou, China.
Qing-Qing LiangCollege of Animal Science and Veterinary Medicine, Henan Agricultural University, Zhengzhou, China.
Xiao-Hui JinCollege of Animal Science and Veterinary Medicine, Henan Agricultural University, Zhengzhou, China.
Lei TangCollege of Animal Science and Veterinary Medicine, Henan Agricultural University, Zhengzhou, China.
Qing-Wen DingCollege of Animal Science and Veterinary Medicine, Henan Agricultural University, Zhengzhou, China.
Zhi-Xiang WangCollege of Animal Science and Veterinary Medicine, Henan Agricultural University, Zhengzhou, China.
Zhan-Yong WeiCollege of Animal Science and Veterinary Medicine, Henan Agricultural University, Zhengzhou, China.ORCID 0000-0001-5731-3145
Henan Agricultural University · CN

Funding

National Key R&D Program 2016YFD0500102National Key R&D Program 2018YFD0500102National Natural Science Foundation of China U1704231
6 · The paper itself

Abstract

Porcine deltacoronavirus (PDCoV) is a novel enteropathogenic coronavirus that causes watery diarrhea in piglets. Little is known regarding the alteration of the gut microbiota in PDCoV-induced diarrhea piglets. In this study, 5-day-old piglets were experimentally infected with PDCoV strain CH-01, and all piglets developed typical clinical disease, characterized by acute and severe watery diarrhea. Histologic lesions were limited to the villous epithelium of the duodenum and ileum. Gut microbiota profiles in the colon and feces of piglets inoculated with PDCoV were investigated using 16S rRNA sequencing. The results showed that PDCoV infection reduced bacterial diversity and significantly altered the composition of the microbiota from the phylum to the genus level in the colon and feces of piglets. Firmicutes (phylum), Lactobacillaceae (family), and Lactobacillus (genus) were significantly increased (p < .01), while the abundance of Bacteroidetes (phylum) was markedly reduced in the colon and feces of the PDCoV-infected piglets (p < .01) when compared to those of the healthy piglets. Furthermore, microbial function prediction indicated that the changes in the intestinal flora also affected the nucleotide transport and metabolism, defense, translation, and transcription function of the intestinal microbiota. The current study provides new insight into the pathology and physiology of PDCoV.

Indexed as

AnimalsAnimals, NewbornBacteriaColonCoronavirusDuodenumFecesGastroenteritis, Transmissible, of SwineGastrointestinal MicrobiomeIleumRNA, Ribosomal, 16SSwineSwine DiseasesRNA, Ribosomal, 16S16S rRNA sequencingintestinal microbiotamicrobial function predictionneonatal pigletsPorcine deltacoronavirus (PDCoV)

Identifiers

PMID32239666
PMCPMC7349149
OpenAlexW3014747885

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.