Evidence map›Paper›PMID 32239382›Full record

ArticleJournal of biomolecular NMR2020

A novel high-dimensional NMR experiment for resolving protein backbone dihedral angle ambiguities.

Clemens Kauffmann, Krzysztof Kazimierczuk, Thomas C Schwarz, Robert Konrat, Anna Zawadzka-Kazimierczuk

Open access · hybridAbstract read
In one paragraph

Article in Journal of biomolecular NMR, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.3field-weighted citation impact, top 44% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Using Cross-Correlated Spin Relaxation to Characterize Backbone Dihedral Angle Distributions of Flexible Protein Segments.Chemphyschem : a European journal of chemical physics and physical chemistry · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Clemens KauffmannMax Perutz Laboratories, Department of Structural and Computational Biology, University of Vienna, Vienna Biocenter Campus 5, 1030, Vienna, Austria.
Krzysztof KazimierczukCentre of New Technologies, University of Warsaw, Banacha 2C, 02-097, Warsaw, Poland.
Thomas C SchwarzMax Perutz Laboratories, Department of Structural and Computational Biology, University of Vienna, Vienna Biocenter Campus 5, 1030, Vienna, Austria.
Robert KonratMax Perutz Laboratories, Department of Structural and Computational Biology, University of Vienna, Vienna Biocenter Campus 5, 1030, Vienna, Austria. robert.konrat@univie.ac.at.
Anna Zawadzka-KazimierczukMax Perutz Laboratories, Department of Structural and Computational Biology, University of Vienna, Vienna Biocenter Campus 5, 1030, Vienna, Austria. anzaw@chem.uw.edu.pl.ORCID http://orcid.org/0000-0002-1125-7923
University of Vienna · ATMax Perutz Labs · ATUniversity of Warsaw · PL

Funding

Austrian Science Fund M 2084Austrian Science Fund P 28937-B21Austrian Science Fund FWF P 28359Austrian Science Fund FWF P 28937Narodowe Centrum Nauki 2017/26/M/ST4/01053
6 · The paper itself

Abstract

Intrinsically disordered proteins (IDPs) are challenging established structural biology perception and urge a reassessment of the conventional understanding of the subtle interplay between protein structure and dynamics. Due to their importance in eukaryotic life and central role in protein interaction networks, IDP research is a fascinating and highly relevant research area in which NMR spectroscopy is destined to be a key player. The flexible nature of IDPs, as a result of the sampling of a vast conformational space, however, poses a tremendous scientific challenge, both technically and theoretically. Pronounced signal averaging results in narrow signal dispersion and requires higher dimensionality NMR techniques. Moreover, a fundamental problem in the structural characterization of IDPs is the definition of the conformational ensemble sampled by the polypeptide chain in solution, where often the interpretation relies on the concept of 'residual structure' or 'conformational preference'. An important source of structural information is information-rich NMR experiments that probe protein backbone dihedral angles in a unique manner. Cross-correlated relaxation experiments have proven to fulfil this task as they provide unique information about protein backbones, particularly in IDPs. Here we present a novel cross-correlation experiment that utilizes non-uniform sampling detection schemes to resolve protein backbone dihedral ambiguities in IDPs. The sensitivity of this novel technique is illustrated with an application to the prototypical IDP [Formula: see text]-Synculein for which unexpected deviations from random-coil-like behaviour could be observed.

Indexed as

Protein Conformationalpha-SynucleinHumansIntrinsically Disordered ProteinsNuclear Magnetic Resonance, BiomolecularUbiquitinalpha-SynucleinIntrinsically Disordered ProteinsUbiquitinChemical shift anisotropyCross-correlated relaxationDihedral anglesDipolar interactionsHigh-dimensional NMR experimentsIntrinsically disordered proteinsNon-uniform sampling

Identifiers

PMID32239382
PMCPMC7211790
OpenAlexW3014190607

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.