Evidence map›Paper›PMID 32239337›Full record

ArticleFish physiology and biochemistry2020

The requirements for sterol regulatory element-binding protein (Srebp) and stimulatory protein 1 (Sp1)-binding elements in the transcriptional activation of two freshwater fish Channa striata and Danio rerio elovl5 elongase.

Pei-Tian Goh, Meng-Kiat Kuah, Yen-Shan Chew, Hui-Ying Teh, Alexander Chong Shu-Chien

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Article in Fish physiology and biochemistry, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.4field-weighted citation impact, top 41% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Pei-Tian GohSchool of Biological Sciences, Universiti Sains Malaysia, 11800 Minden, Penang, Malaysia.
Meng-Kiat KuahCentre for Chemical Biology, Sains@USM, Blok B No. 10, Persiaran Bukit Jambul, 11900 Bayan Lepas, Penang, Malaysia.
Yen-Shan ChewSchool of Biological Sciences, Universiti Sains Malaysia, 11800 Minden, Penang, Malaysia.
Hui-Ying TehSchool of Biological Sciences, Universiti Sains Malaysia, 11800 Minden, Penang, Malaysia.
Alexander Chong Shu-ChienSchool of Biological Sciences, Universiti Sains Malaysia, 11800 Minden, Penang, Malaysia. alex@usm.my.
Universiti Sains Malaysia · MY

Funding

Universiti Sains Malaysia RU Grant: 1001/PBIOLOGI/815064
6 · The paper itself

Abstract

Fish are a major source of beneficial n-3 LC-PUFA in human diet, and there is considerable interest to elucidate the mechanism and regulatory aspects of LC-PUFA biosynthesis in farmed species. Long-chain polyunsaturated fatty acid (LC-PUFA) biosynthesis involves the activities of two groups of enzymes, the fatty acyl desaturase (Fads) and elongase of very long-chain fatty acid (Elovl). The promoters of elovl5 elongase, which catalyses the rate-limiting reaction of elongating polyunsaturated fatty acid (PUFA), have been previously described and characterized from several marine and diadromous teleost species. We report here the cloning and characterization of elovl5 promoter from two freshwater fish species, the carnivorous snakehead fish (Channa striata) and zebrafish. Results show the presence of sterol-responsive elements (SRE) in the core regulatory region of both promoters, suggesting the importance of sterol regulatory element-binding protein (Srebp) in the regulation of elovl5 for both species. Mutagenesis luciferase and electrophoretic mobility shift assays further validate the role of SRE for basal transcriptional activation. In addition, several Sp1-binding sites located in close proximity with SRE were present in the snakehead promoter, with one having a potential synergy with SRE in the regulation of elovl5 expression. The core zebrafish elovl5 promoter fragment also directed in vivo expression in the yolk syncytial layer of developing zebrafish embryos.

Indexed as

AcetyltransferasesAnimalsCloning, MolecularDNAFishesLuciferasesMutagenesis, Site-DirectedPromoter Regions, GeneticSp1 Transcription FactorSterol Regulatory Element Binding ProteinsTranscriptional ActivationTransfectionZebrafishZebrafish ProteinsAcetyltransferasesDNAElovl5 protein, zebrafishLuciferasesSp1 Transcription FactorSterol Regulatory Element Binding ProteinsZebrafish ProteinsChanna striataelovl5 elongaseGene promoterLong-chain polyunsaturated fatty acidYolk syncytial layerZebrafish

Identifiers

PMID32239337
OpenAlexW3014637459

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.