Evidence map›Paper›PMID 32239288›Full record

ArticleCurrent microbiology2020

Involvement of Xyr1 and Are1 for Trichodermapepsin Gene Expression in Response to Cellulose and Galactose in Trichoderma reesei.

Nayani Dhanushka Daranagama, Yoshiyuki Suzuki, Yosuke Shida, Wataru Ogasawara

Abstract read
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In one paragraph

Article in Current microbiology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.4field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 7 citations in OpenAlex.

  1. Promoters and Synthetic Promoters in Trichoderma reesei.Methods in molecular biology (Clifton, N.J.) · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Nayani Dhanushka DaranagamaDepartment of Bioengineering, Nagaoka University of Technology, 1603-1, Kamitomioka, Nagaoka, 940-2188, Japan.
Yoshiyuki SuzukiAdvanced Course, KOSEN (National Institute of Technology), Nagaoka College, 888, Nishikatakai, Nagaoka, Niigata, 940-8532, Japan.
Yosuke ShidaDepartment of Bioengineering, Nagaoka University of Technology, 1603-1, Kamitomioka, Nagaoka, 940-2188, Japan.
Wataru OgasawaraDepartment of Bioengineering, Nagaoka University of Technology, 1603-1, Kamitomioka, Nagaoka, 940-2188, Japan. owataru@vos.nagaokaut.ac.jp.
Nagaoka University of Technology · JPNagaoka National College of Technology · JP

Funding

New Energy and Industrial Technology Development Organization P16009
6 · The paper itself

Abstract

The secretome of Trichoderma reesei contains a mixture of cellulases, hemicellulases, amylases, proteases, and lipases that synergistically degrade plant biomass. Trichodermapepsin (TrAsP), the most prominent protease of T. reesei, affects the stability of cellulases. Similar to cellulase production, TrAsP production also depends on carbon and nitrogen sources. Unlike the cellulase mechanism, the regulatory mechanism of TrAsP remains unknown. Therefore, this study aimed to determine the effect of the main cellulase regulator Xyr1 and nitrogen regulator Are1 on trasp regulation. Cellulase inducer Avicel and TrAsP inducer galactose were used as carbon sources. qRT-PCR analysis revealed that Xyr1 and Are1 acted as a repressor and an activator for trasp expression, respectively. Compared to Avicel, relative expression was higher in galactose. The binding motifs of Xyr1 and Are1 were located in upstream of the trasp promoter. From promoter deletant analysis using the β-glucuronidase reporter gene, the area from - 870 bp to - 670 bp was identified as the only region for positive regulation and there were both binding motifs of Xyr1 and Are1. Reporter assay of mutants confirmed functions of downregulation of Xyr1 and upregulation of Are1. Electrophoretic mobility shift assay demonstrated the binding ability of Xyr1 and Are1 to the particular binding motifs and their functionality was confirmed. Further, this study demonstrated that Cre1, Xpp1, and Pac1 downregulate trasp expression similar to that in cellulase regulation mechanism. These results demonstrate that transcriptional regulators of cellulase control trasp expression and suggest the possibility of the existence of specific protease regulators in T. reesei.

Indexed as

CelluloseFungal ProteinsGalactoseGene Expression Regulation, FungalHypocrealesPeptide HydrolasesPromoter Regions, GeneticTranscriptional ActivationTranscription FactorsCelluloseFungal ProteinsGalactosePeptide HydrolasesTranscription Factors

Identifiers

PMID32239288
OpenAlexW3015092583

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.