Evidence map›Paper›PMID 32238481›Full record

ArticleRNA (New York, N.Y.)2020

A rapid and simple quantitative method for specific detection of smaller coterminal RNA by PCR (DeSCo-PCR): application to the detection of viral subgenomic RNAs.

Pulkit Kanodia, K Reddisiva Prasanth, Vicky C Roa-Linares, Shelton S Bradrick, Mariano A Garcia-Blanco, W Allen Miller

Open access · bronzeAbstract read
In one paragraph

Article in RNA (New York, N.Y.), 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.9field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 3 countries.

Pulkit KanodiaInterdepartmental Genetics and Genomics, Iowa State University, Ames, Iowa 50011, USA.ORCID 0000-0001-7904-5129
K Reddisiva PrasanthDepartment of Biochemistry and Molecular Biology, University of Texas Medical Branch, Galveston, Texas 77555, USA.ORCID 0000-0003-0630-522X
Vicky C Roa-LinaresDepartment of Biochemistry and Molecular Biology, University of Texas Medical Branch, Galveston, Texas 77555, USA.ORCID 0000-0001-9253-615X
Shelton S BradrickDepartment of Biochemistry and Molecular Biology, University of Texas Medical Branch, Galveston, Texas 77555, USA.ORCID 0000-0003-1566-9797
Mariano A Garcia-BlancoDepartment of Biochemistry and Molecular Biology, University of Texas Medical Branch, Galveston, Texas 77555, USA.ORCID 0000-0001-8538-1997
W Allen MillerInterdepartmental Genetics and Genomics, Iowa State University, Ames, Iowa 50011, USA.ORCID 0000-0003-0603-2751
Iowa State University · USThe University of Texas Medical Branch at Galveston · USDuke-NUS Medical School · SGUniversidad de Antioquia · CO

Funding

Control of cap-independent translation by a viral 3' UTRR01GM067104 · NIGMS · IOWA STATE UNIVERSITY · PI MILLER, WYATT ALLEN · 2003 to 2016
$3.0M
NIGMS NIH HHS R01 GM067104
6 · The paper itself

Abstract

RNAs that are 5'-truncated versions of a longer RNA but share the same 3' terminus can be generated by alternative promoters in transcription of cellular mRNAs or by replicating RNA viruses. These truncated RNAs cannot be distinguished from the longer RNA by a simple two-primer RT-PCR because primers that anneal to the cDNA from the smaller RNA also anneal to-and amplify-the longer RNA-derived cDNA. Thus, laborious methods, such as northern blot hybridization, are used to distinguish shorter from longer RNAs. For rapid, low-cost, and specific detection of these truncated RNAs, we report

Indexed as

Alternative SplicingCell Line, TumorDNA, ComplementaryEvaluation Studies as TopicGenome, ViralHeLa CellsHumansNucleic Acid ConformationPolymerase Chain ReactionPromoter Regions, GeneticRNA, MessengerRNA, ViralRNA VirusesTombusviridaeZika VirusZika Virus InfectionDNA, ComplementaryRNA, MessengerRNA, Viralflaviviruslong noncoding RNATombusviridaetruncated RNAZika virus

Identifiers

PMID32238481
PMCPMC7297113
OpenAlexW3015018931

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.