Evidence map›Paper›PMID 32235805›Full record

ArticleMolecules (Basel, Switzerland)2020

New Peptide-Based Pharmacophore Activates 20S Proteasome.

Paweł A Osmulski, Przemysław Karpowicz, Elżbieta Jankowska, Jonathan Bohmann, Andrew M Pickering, Maria Gaczyńska

Open access · goldAbstract read
In one paragraph

Article in Molecules (Basel, Switzerland), 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed, 1 pooled it
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 1 synthesis or guideline pooled it, 27 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Discovery and Development of Cyclic Peptide Proteasome Stimulators.Chembiochem : a European journal of chemical biology · 2024
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Frontiers in molecular biosciences · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Paweł A OsmulskiDepartment of Molecular Medicine, UT Health San Antonio, Texas, TX 78245, USA.
Przemysław KarpowiczDepartment of Organic Chemistry, Faculty of Chemistry, University of Gdansk, 80-308 Gdansk, Poland.ORCID 0000-0003-4912-3709
Elżbieta JankowskaDepartment of Biomedical Chemistry, Faculty of Chemistry, University of Gdansk, 80-308 Gdansk, Poland.ORCID 0000-0002-1099-8885
Jonathan BohmannSouthwest Research Institute, San Antonio, Texas, TX 78238, USA.
Andrew M PickeringDepartment of Molecular Medicine, UT Health San Antonio, Texas, TX 78245, USA.ORCID 0000-0001-6635-4758
Maria GaczyńskaDepartment of Molecular Medicine, UT Health San Antonio, Texas, TX 78245, USA.
The University of Texas Health Science Center at San Antonio · USUniversity of Gdańsk · PLSouthwest Research Institute · US

Funding

Proteasome dysfunction as a driver of age-associated risk for Alzheimer's disease onset and progressionRF1AG065301 · NIA · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI PICKERING, ANDREW MICHAEL · 2020 to 2020
$2.1M
Dissecting the Interplay between proteasome dysfunction, proteostasis and Alzheimer's diseaseR56AG061051 · NIA · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI PICKERING, ANDREW MICHAEL · 2018 to 2019
$1.5M
Mechanisms of Regulation of the Proteosome ActivitiesR01GM069819 · NIGMS · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI GACZYNSKA, MARIA E · 2004 to 2008
$1.1M
NIA NIH HHS R56 AG061051NIA NIH HHS RF1 AG065301NIH HHS R01 GM069819NIH HHS R56 AG061051
6 · The paper itself

Abstract

The proteasome is a pivotal element of controlled proteolysis, responsible for the catabolic arm of proteostasis. By inducing apoptosis, small molecule inhibitors of proteasome peptidolytic activities are successfully utilized in treatment of blood cancers. However, the clinical potential of proteasome activation remains relatively unexplored. In this work, we introduce short TAT peptides derived from HIV-1 Tat protein and modified with synthetic turn-stabilizing residues as proteasome agonists. Molecular docking and biochemical studies point to the α1/α2 pocket of the core proteasome α ring as the binding site of TAT peptides. We postulate that the TATs' pharmacophore consists of an N-terminal basic pocket-docking "activation anchor" connected via a β turn inducer to a C-terminal "specificity clamp" that binds on the proteasome α surface. By allosteric effects-including destabilization of the proteasomal gate-the compounds substantially augment activity of the core proteasome in vitro. Significantly, this activation is preserved in the lysates of cultured cells treated with the compounds. We propose that the proteasome-stimulating TAT pharmacophore provides an attractive lead for future clinical use.

Indexed as

Allosteric RegulationBinding SitesCell Line, TumorChymotrypsinCytoplasmHumansMicroscopy, Atomic ForceMolecular Docking SimulationPeptide HydrolasesPeptidesProteasome Endopeptidase Complextat Gene Products, Human Immunodeficiency VirusChymotrypsinPeptide HydrolasesPeptidesProteasome Endopeptidase Complextat Gene Products, Human Immunodeficiency Virusactivationallosteryatomic force microscopybeta turnpeptidesproteasomeproteasome dynamics

Identifiers

PMID32235805
PMCPMC7145288
OpenAlexW3012861046

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.