Evidence map›Paper›PMID 32235513›Full record

ArticleGenes2020

PIDS: A User-Friendly Plant DNA Fingerprint Database Management System.

Bin Jiang, Yikun Zhao, Hongmei Yi, Yongxue Huo, Haotian Wu, Jie Ren, Jianrong Ge, Jiuran Zhao, Fengge Wang

Open access · goldAbstract read
In one paragraph

Article in Genes, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
0.6field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 4 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Bin JiangResearch Center, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100097, China.
Yikun ZhaoResearch Center, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100097, China.
Hongmei YiResearch Center, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100097, China.
Yongxue HuoResearch Center, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100097, China.
Haotian WuResearch Center, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100097, China.
Jie RenResearch Center, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100097, China.
Jianrong GeResearch Center, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100097, China.
Jiuran ZhaoResearch Center, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100097, China.
Fengge WangResearch Center, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100097, China.
Beijing Academy of Agricultural and Forestry Sciences · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The high variability and somatic stability of DNA fingerprints can be used to identify individuals, which is of great value in plant breeding. DNA fingerprint databases are essential and important tools for plant molecular research because they provide powerful technical and information support for crop breeding, variety quality control, variety right protection, and molecular marker-assisted breeding. Building a DNA fingerprint database involves the production of large amounts of heterogeneous data for which storage, analysis, and retrieval are time and resource consuming. To process the large amounts of data generated by laboratories and conduct quality control, a database management system is urgently needed to track samples and analyze data. We developed the plant international DNA-fingerprinting system (PIDS) using an open source web server and free software that has automatic collection, storage, and efficient management functions based on merging and comparison algorithms to handle massive microsatellite DNA fingerprint data. PIDS also can perform genetic analyses. This system can match a corresponding capillary electrophoresis image on each primer locus as fingerprint data to upload to the server. PIDS provides free customization and extension of back-end functions to meet the requirements of different laboratories. This system can be a significant tool for plant breeders and can be applied in forensic science for human fingerprint identification, as well as in virus and microorganism research.

Indexed as

Database Management SystemsMicrosatellite RepeatsSoftwareAlgorithmsDNA FingerprintingDNA, PlantPlantsDNA, PlantalgorithmsdatabaseDNA fingerprintgenotypingmicrosatellites

Identifiers

PMID32235513
PMCPMC7230844
OpenAlexW3013933256

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.