Evidence map›Paper›PMID 32234480›Full record

ArticleCell reports2020

FMRP Control of Ribosome Translocation Promotes Chromatin Modifications and Alternative Splicing of Neuronal Genes Linked to Autism.

Sneha Shah, Gemma Molinaro, Botao Liu, Ruijia Wang, Kimberly M Huber, Joel D Richter

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed
11.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed, 93 citations in OpenAlex.

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  14. Electrical Synapses Mediate Embryonic Hyperactivity in a Zebrafish Model of Fragile X Syndrome.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2024
    Article
  15. Article
  16. Article
  17. Review
  18. Antisense oligonucleotide rescue of CGG expansion-dependentProceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  19. Article
  20. Narrative Review: Update on the Molecular Diagnosis of Fragile X Syndrome.International journal of molecular sciences · 2023
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Sneha ShahProgram in Molecular Medicine, University of Massachusetts Medical School, Worcester, MA 01605, USA.
Gemma MolinaroDepartment of Neuroscience, University of Texas Southwestern Medical School, Dallas, TX 75390, USA.
Botao LiuProgram in Molecular Medicine, University of Massachusetts Medical School, Worcester, MA 01605, USA.
Ruijia WangProgram in Molecular Medicine, University of Massachusetts Medical School, Worcester, MA 01605, USA.
Kimberly M HuberDepartment of Neuroscience, University of Texas Southwestern Medical School, Dallas, TX 75390, USA. Electronic address: kimberly.huber@utsouthwestern.edu.
Joel D RichterProgram in Molecular Medicine, University of Massachusetts Medical School, Worcester, MA 01605, USA. Electronic address: joel.richter@umassmed.edu.
University of Massachusetts Chan Medical School · USThe University of Texas Southwestern Medical Center · US

Funding

Strategies to rescue PI3K dysregulation in Fragile X SyndromeU54HD082013 · NICHD · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI RICHTER, JOEL D · 2014 to 2019
$10.2M
Neurophysiological and acute pharmacological studies in FXS patientsU54HD082008 · NICHD · UT SOUTHWESTERN MEDICAL CENTER · PI HUBER, KIMBERLY M. · 2014 to 2019
$9.8M
POLYADENYLATION AND TRANSLATIONAL CONTROLR01GM046779 · NIGMS · WORCESTER FOUNDATION FOR BIOMEDICAL RES · PI RICHTER, JOEL D · 1992 to 2022
$7.7M
NICHD NIH HHS U54 HD082008NICHD NIH HHS U54 HD082013NIGMS NIH HHS R01 GM046779
6 · The paper itself

Abstract

Silencing of FMR1 and loss of its gene product, FMRP, results in fragile X syndrome (FXS). FMRP binds brain mRNAs and inhibits polypeptide elongation. Using ribosome profiling of the hippocampus, we find that ribosome footprint levels in Fmr1-deficient tissue mostly reflect changes in RNA abundance. Profiling over a time course of ribosome runoff in wild-type tissue reveals a wide range of ribosome translocation rates; on many mRNAs, the ribosomes are stalled. Sucrose gradient ultracentrifugation of hippocampal slices after ribosome runoff reveals that FMRP co-sediments with stalled ribosomes, and its loss results in decline of ribosome stalling on specific mRNAs. One such mRNA encodes SETD2, a lysine methyltransferase that catalyzes H3K36me3. Chromatin immunoprecipitation sequencing (ChIP-seq) demonstrates that loss of FMRP alters the deployment of this histone mark. H3K36me3 is associated with alternative pre-RNA processing, which we find occurs in an FMRP-dependent manner on transcripts linked to neural function and autism spectrum disorders.

Indexed as

Alternative SplicingAnimalsAutistic DisorderChromatinFragile X Messenger Ribonucleoprotein 1HippocampusHistonesLysineMaleMice, Inbred C57BLMice, KnockoutNeuronsPolyribosomesRibosomesRNA, MessengerRNA Processing, Post-TranscriptionalChromatinFragile X Messenger Ribonucleoprotein 1HistonesLysineRNA, Messengeralternative splicingautismchromatin modificationsFragile X Syndromeribosome stalling

Identifiers

PMID32234480
PMCPMC7179797
OpenAlexW3015128273

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.