Evidence map›Paper›PMID 32234073›Full record

ArticleVeterinary research2020

Comparison of pathogenicity of subtype H9 avian influenza wild-type viruses from a wide geographic origin expressing mono-, di-, or tri-basic hemagglutinin cleavage sites.

Rokshana Parvin, Jan Schinkoethe, Christian Grund, Reiner Ulrich, Franziska Bönte, Klaus P Behr, Matthias Voss, Mohammed A Samad, Kareem E Hassan, Christine Luttermann and 2 more

Open access · goldAbstract readComparative Study
In one paragraph

Article in Veterinary research, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed, 1 pooled it
3.3field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 1 synthesis or guideline pooled it, 34 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 7 institutions in 3 countries.

Rokshana ParvinInstitute of Diagnostic Virology, Federal Research Institute for Animal Health, Friedrich-Loeffler-Institute (FLI), Suedufer 10, 17493, Greifswald-Insel Riems, Germany.
Jan SchinkoetheInstitute of Veterinary Pathology, Faculty of Veterinary Medicine, University of Leipzig, An den Tierkliniken 33, 04103, Leipzig, Germany.
Christian GrundInstitute of Diagnostic Virology, Federal Research Institute for Animal Health, Friedrich-Loeffler-Institute (FLI), Suedufer 10, 17493, Greifswald-Insel Riems, Germany.
Reiner UlrichInstitute of Veterinary Pathology, Faculty of Veterinary Medicine, University of Leipzig, An den Tierkliniken 33, 04103, Leipzig, Germany.
Franziska BönteUniversity of Applied Sciences Wedel, Feldstraße 143, 22880, Wedel, Germany.
Klaus P BehrAniCon Labor GmbH, Mühlenstraße, 49685, Höltinghausen, Germany.
Matthias VossLohmann Tierzucht GmbH, Veterinär-Labor, Abschnede 64, 27472, Cuxhaven, Germany.
Mohammed A SamadNRL-AI, Bangladesh Livestock Research Institute (BLRI), Savar, Dhaka, Bangladesh.
Kareem E HassanInstitute of Diagnostic Virology, Federal Research Institute for Animal Health, Friedrich-Loeffler-Institute (FLI), Suedufer 10, 17493, Greifswald-Insel Riems, Germany.
Christine LuttermannInstitute of Immunology, Friedrich-Loeffler-Institute, Greifswald-Riems, Germany.
Martin BeerInstitute of Diagnostic Virology, Federal Research Institute for Animal Health, Friedrich-Loeffler-Institute (FLI), Suedufer 10, 17493, Greifswald-Insel Riems, Germany.
Timm HarderInstitute of Diagnostic Virology, Federal Research Institute for Animal Health, Friedrich-Loeffler-Institute (FLI), Suedufer 10, 17493, Greifswald-Insel Riems, Germany. Timm.Harder@fli.de.
Friedrich-Loeffler-Institut · DELeipzig University · DEBangladesh Agricultural University · BDBangladesh Livestock Research Institute · BDBeni-Suef University · EGLohmann Tierzucht (Germany) · DEUniversity of Applied Sciences Wedel · DE

Funding

Alexander von Humboldt-Stiftung 3.5-1191460-GD F-P
6 · The paper itself

Abstract

An intravenous pathogenicity index (IVPI) of > 1.2 in chickens or, in case of subtypes H5 and H7, expression of a polybasic hemagglutinin cleavage site (HACS), signals high pathogenicity (HP). Viruses of the H9N2-G1 lineage, which spread across Asia and Africa, are classified to be of low pathogenicity although, in the field, they became associated with severe clinical signs and epizootics in chickens. Here we report on a pre-eminent trait of recent H9N2-G1 isolates from Bangladesh and India, which express a tribasic HACS (motif PAKSKR-GLF; reminiscent of an HPAIV-like polybasic HACS) and compare their features to H9Nx viruses with di- and monobasic HACS from other phylogenetic and geographic origins. In an in vitro assay, the tribasic HACS of H9N2 was processed by furin-like proteases similar to bona fide H5 HPAIV while some dibasic sites showed increased cleavability but monobasic HACS none. Yet, all viruses remained trypsin-dependent in cell culture. In ovo, only tribasic H9N2 viruses were found to replicate in a grossly extended spectrum of embryonic organs. In contrast to all subtype H5/H7 HPAI viruses, tribasic H9N2 viruses did not replicate in endothelial cells either in the chorio-allantoic membrane or in other embryonic tissues. By IVPI, all H9Nx isolates proved to be of low pathogenicity. Pathogenicity assessment of tribasic H9N2-G1 viruses remains problematic. It cannot be excluded that the formation of a third basic amino acid in the HACS forms an intermediate step towards a gain in pathogenicity. Continued observation of the evolution of these viruses in the field is recommended.

Indexed as

ChickensAnimalsChick EmbryoGeographyHemagglutininsInfluenza A Virus, H9N2 SubtypeInfluenza in BirdsPhylogenyPoultry DiseasesVirulenceHemagglutinins

Identifiers

PMID32234073
PMCPMC7106749
OpenAlexW3014685319

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.