Evidence map›Paper›PMID 32234038›Full record

ArticleVirology journal2020

Genomic organization of a Gamma-6 papillomavirus metagenomic discovered from vaginal swab samples of Chinese pregnant women.

Yu Ling, Jianqiang Wang, Jun Yin, Jianpu Xu, Yufan Wu, Rui Zhou, Juan Lu, Shixing Yang, Xiaochun Wang, Quan Shen and 1 more

Abstract read
In one paragraph

Article in Virology journal, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Genome Sequences of Five Microviruses and a Murine Norovirus.Microbiology resource announcements · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Yu LingSchool of Medicine, Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu, 212013, People's Republic of China.
Jianqiang WangIntensive Care Unit, Jintan District Hospital of Traditional Chinese Medicine, 1006 Huixian Road, Changzhou, Jiangsu, 213200, People's Republic of China.
Jun YinZhangjiagang Customs, 28 Renmin Road, Zhangjiagang, Jiangsu, 215699, People's Republic of China.
Jianpu XuZhangjiagang Customs, 28 Renmin Road, Zhangjiagang, Jiangsu, 215699, People's Republic of China.
Yufan WuZhangjiagang Customs, 28 Renmin Road, Zhangjiagang, Jiangsu, 215699, People's Republic of China.
Rui ZhouSchool of Medicine, Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu, 212013, People's Republic of China.
Juan LuSchool of Medicine, Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu, 212013, People's Republic of China.
Shixing YangSchool of Medicine, Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu, 212013, People's Republic of China.
Xiaochun WangSchool of Medicine, Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu, 212013, People's Republic of China.
Quan ShenSchool of Medicine, Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu, 212013, People's Republic of China. shenquan@ujs.edu.cn.
Wen ZhangSchool of Medicine, Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu, 212013, People's Republic of China. zhangwen@ujs.edu.cn.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A complete genome sequence of human papillomaviruses (HPV) named as HPV-ujs-21015 was determined by viral metagenomic and PCR methods. The complete genome is 7354 bp in length with GC content of 41.7%, of which the genome was predicted to contain six ORFs (Open Reading Frame, ORF) coding for four early proteins (E7, E1, E4, and E2) and two late proteins (L1 and L2). Phylogenetic analysis based on the complete genome and the L1 protein showed that HPV-ujs-21015 belongs to a type 214 member within genus Gamma-6 papillomavirus. It is the first complete genome of Gamma-6 papillomavirus discovered from pregnant women in China.

Indexed as

Genome, ViralMetagenomeAsian PeopleCapsid ProteinsChinaFemaleGammapapillomavirusHumansOpen Reading FramesPapillomavirus InfectionsPhylogenyPregnancySequence Analysis, DNAVaginaViral ProteinsCapsid ProteinsL1 protein, Human papillomavirus type 6Viral ProteinsComplete genomeGamma-6 papillomavirusGenomic organizationHuman papillomavirusesVirus metagenomics

Identifiers

PMID32234038
PMCPMC7110641

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.