Evidence map›Paper›PMID 32232483›Full record

ArticleBlood2020

An intestinal organoid-based platform that recreates susceptibility to T-cell-mediated tissue injury.

Yu Matsuzawa-Ishimoto, Ashley Hine, Yusuke Shono, Eugene Rudensky, Amina Lazrak, Frank Yeung, Jessica A Neil, Xiaomin Yao, Ying-Han Chen, Thomas Heaney and 17 more

Open access · bronzeAbstract read
In one paragraph

Article in Blood, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
2.8field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 60 citations in OpenAlex.

  1. Trial
  2. Article
  3. Article
  4. Article
  5. Review
  6. Review
  7. Article
  8. Review
  9. Review
  10. Article
  11. Article
  12. Autophagy and Bacterial infections.Autophagy reports · 2025
    Review
  13. Article
  14. Article
  15. Review
  16. Article
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

27 authors at 6 institutions in 3 countries.

Yu Matsuzawa-IshimotoKimmel Center for Biology and Medicine at the Skirball Institute.
Ashley HineDepartment of Microbiology, and.
Yusuke ShonoDepartment of Immunology, Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center, New York, NY.
Eugene RudenskyKimmel Center for Biology and Medicine at the Skirball Institute.
Amina LazrakDepartment of Immunology, Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center, New York, NY.
Frank YeungKimmel Center for Biology and Medicine at the Skirball Institute.
Jessica A NeilKimmel Center for Biology and Medicine at the Skirball Institute.
Xiaomin YaoKimmel Center for Biology and Medicine at the Skirball Institute.
Ying-Han ChenKimmel Center for Biology and Medicine at the Skirball Institute.
Thomas HeaneyKimmel Center for Biology and Medicine at the Skirball Institute.
Samantha L SchusterKimmel Center for Biology and Medicine at the Skirball Institute.
Erin E ZwackDepartment of Microbiology, and.
Jordan E AxelradDivision of Gastroenterology and Hepatology, Department of Medicine, New York University Grossman School of Medicine, New York, NY.
David HudesmanDivision of Gastroenterology and Hepatology, Department of Medicine, New York University Grossman School of Medicine, New York, NY.
Jennifer J TsaiDepartment of Immunology, Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center, New York, NY.
Katherine NicholsDepartment of Immunology, Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center, New York, NY.
M Zahidunnabi DewanHistopathology Core, Office of Collaborative Science, and.
Michael CammerMicroscopy Core, Office of Collaborative Science, New York University Grossman School of Medicine, New York, NY.
Allison BealInnate Immunity Research Unit, GlaxoSmithKline, Collegeville, PA.
Sandra HoffmanInnate Immunity Research Unit, GlaxoSmithKline, Collegeville, PA.
Brad GeddesInnate Immunity Research Unit, GlaxoSmithKline, Collegeville, PA.
John BertinInnate Immunity Research Unit, GlaxoSmithKline, Collegeville, PA.
Chen LiuDepartment of Pathology and Laboratory Medicine, Rutgers New Jersey Medical School and Rutgers Robert Wood Johnson Medical School, Newark, NJ.
Victor J TorresDepartment of Microbiology, and.
P'ng LokeDepartment of Microbiology, and.
Marcel R M van den BrinkDepartment of Immunology, Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center, New York, NY.
Ken CadwellKimmel Center for Biology and Medicine at the Skirball Institute.
Memorial Sloan Kettering Cancer Center · USNew York University · USGlaxoSmithKline (United States) · USInstitute of Biomedical Science · GBCollaborative Research Group · AURutgers, The State University of New Jersey · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
Project-005UL1TR001445 · NCATS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI BREDELLA, MIRIAM ANTOINETTE, HOCHMAN, JUDITH S · 2015 to 2025
$103.5M
Vaccine FacilityP30CA016087 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI ADRIANA HEGUY · 1985 to 2026
$83.1M
T LYMPHOCYTE SUBSET FUNCTION POST-TRANSPLANTATIONP01CA023766 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI PAMER, ERIC G. · 1985 to 2023
$59.0M
Thymic and Peripheral Aspects of T Cell Aging and RejuvenationP01AG052359 · NIA · UNIVERSITY OF ARIZONA · PI Bonnie LaFleur · 2017 to 2026
$23.5M
Systems Biology of Microbiome-mediated Resilience to Antibiotic-resistant PathogensU01AI124275 · NIAID · SLOAN-KETTERING INST CAN RESEARCH · PI PAMER, ERIC G., XAVIER, JOAO · 2016 to 2020
$8.9M
Diabetes, Digestive, and Kidney Diseases Extramural ResearchR01DK093668 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI Ken Hashigiwa Cadwell · 2011 to 2026
$7.3M
Regulation of mucosal immune responses by helminth infectionsZIAAI001255 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI LOKE, P'NG · 2020 to 2025
$6.1M
Redefining the role of autophagy in bacterial diseaseR01AI121244 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI Ken Hashigiwa Cadwell · 2017 to 2026
$5.6M
The role of intestinal microbiota in graft-versus-host diseaseR01CA228308 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI Philip L Lorenzi, Marcel R M van den Brink · 2018 to 2026
$5.2M
The role of autophagy gene Atg16L1 in allogeneic hematopoietic stem cell transplantation - Resubmission - 1R01HL123340 · NHLBI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI CADWELL, KEN HASHIGIWA, VAN DEN BRINK, MARCEL R M · 2015 to 2022
$5.2M
Regulation of the intestinal stem cell compartment after hematopoietic transplantationR01HL125571 · NHLBI · SLOAN-KETTERING INST CAN RESEARCH · PI Alan M Hanash · 2015 to 2026
$4.4M
Howard Hughes Medical InstituteNCATS NIH HHS UL1 TR001445NCI NIH HHS P01 CA023766NCI NIH HHS P30 CA008748NCI NIH HHS P30 CA016087NCI NIH HHS R01 CA228308NCI NIH HHS R01 CA228358NHLBI NIH HHS R01 HL123340NHLBI NIH HHS R01 HL125571NHLBI NIH HHS R01 HL125816NHLBI NIH HHS R01 HL147584NIAID NIH HHS R01 AI121244NIAID NIH HHS R01 AI130945NIAID NIH HHS U01 AI124275NIA NIH HHS P01 AG052359NIDDK NIH HHS R01 DK093668NIDDK NIH HHS R01 DK103788
6 · The paper itself

Abstract

A goal in precision medicine is to use patient-derived material to predict disease course and intervention outcomes. Here, we use mechanistic observations in a preclinical animal model to design an ex vivo platform that recreates genetic susceptibility to T-cell-mediated damage. Intestinal graft-versus-host disease (GVHD) is a life-threatening complication of allogeneic hematopoietic cell transplantation. We found that intestinal GVHD in mice deficient in Atg16L1, an autophagy gene that is polymorphic in humans, is reversed by inhibiting necroptosis. We further show that cocultured allogeneic T cells kill Atg16L1-mutant intestinal organoids from mice, which was associated with an aberrant epithelial interferon signature. Using this information, we demonstrate that pharmacologically inhibiting necroptosis or interferon signaling protects human organoids derived from individuals harboring a common ATG16L1 variant from allogeneic T-cell attack. Our study provides a roadmap for applying findings in animal models to individualized therapy that targets affected tissues.

Indexed as

OrganoidsAcrylamidesAnimalsAutophagyAutophagy-Related ProteinsBone Marrow TransplantationCoculture TechniquesColonFemaleGenetic Predisposition to DiseaseGraft vs Host DiseaseHumansImidazolesIndolesInflammatory Bowel DiseasesIntestinal DiseasesAcrylamidesATG16L1 protein, humanAtg16l1 protein, mouseAutophagy-Related ProteinsImidazolesIndolesN-(4-(N-(3-methoxypyrazin-2-yl)sulfamoyl)phenyl)-3-(5-nitrothiophene-2-yl)acrylamidenecrostatin-1NitrilesPyrazolesPyrimidinesReceptor-Interacting Protein Serine-Threonine KinasesRipk3 protein, mouseruxolitinibSulfonamides

Identifiers

PMID32232483
PMCPMC7317146
OpenAlexW3013752477

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.