Evidence map›Paper›PMID 32232370›Full record

ArticleNucleic acids research2020

Efficient and risk-reduced genome editing using double nicks enhanced by bacterial recombination factors in multiple species.

Xiaozhen He, Wenfeng Chen, Zhen Liu, Guirong Yu, Youbang Chen, Yi-Jun Cai, Ling Sun, Wanli Xu, Lili Zhong, Caixi Gao and 22 more

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.2field-weighted citation impact, top 51% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 5 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

32 authors at 6 institutions in 1 country.

Xiaozhen HeInstitute of Life Sciences, Fuzhou University, Fuzhou, Fujian 350108, China.
Wenfeng ChenInstitute of Life Sciences, Fuzhou University, Fuzhou, Fujian 350108, China.
Zhen LiuInstitute of Neuroscience, CAS Center for Excellence in Brain Science and Intelligence Technology, State Key Laboratory of Neuroscience, CAS Key Laboratory of Primate Neurobiology, Chinese Academy of Sciences, Shanghai 200031, China.
Guirong YuInstitute of Life Sciences, Fuzhou University, Fuzhou, Fujian 350108, China.
Youbang ChenInstitute of Life Sciences, Fuzhou University, Fuzhou, Fujian 350108, China.
Yi-Jun CaiInstitute of Neuroscience, CAS Center for Excellence in Brain Science and Intelligence Technology, State Key Laboratory of Neuroscience, CAS Key Laboratory of Primate Neurobiology, Chinese Academy of Sciences, Shanghai 200031, China.
Ling SunInstitute of Life Sciences, Fuzhou University, Fuzhou, Fujian 350108, China.
Wanli XuInstitute of Life Sciences, Fuzhou University, Fuzhou, Fujian 350108, China.
Lili ZhongInstitute of Life Sciences, Fuzhou University, Fuzhou, Fujian 350108, China.
Caixi GaoInstitute of Life Sciences, Fuzhou University, Fuzhou, Fujian 350108, China.
Jishen ChenInstitute of Life Sciences, Fuzhou University, Fuzhou, Fujian 350108, China.
Minjie ZhangInstitute of Life Sciences, Fuzhou University, Fuzhou, Fujian 350108, China.
Shengxi YangInstitute of Life Sciences, Fuzhou University, Fuzhou, Fujian 350108, China.
Yizhou YaoInstitute of Life Sciences, Fuzhou University, Fuzhou, Fujian 350108, China.
Zhiping ZhangInstitute of Life Sciences, Fuzhou University, Fuzhou, Fujian 350108, China.
Fujun MaInstitute of Life Sciences, Fuzhou University, Fuzhou, Fujian 350108, China.
Chen-Chen ZhangInstitute of Neuroscience, CAS Center for Excellence in Brain Science and Intelligence Technology, State Key Laboratory of Neuroscience, CAS Key Laboratory of Primate Neurobiology, Chinese Academy of Sciences, Shanghai 200031, China.
Hui-Ping LuInstitute of Neuroscience, CAS Center for Excellence in Brain Science and Intelligence Technology, State Key Laboratory of Neuroscience, CAS Key Laboratory of Primate Neurobiology, Chinese Academy of Sciences, Shanghai 200031, China.
Bin YuInstitute of Neuroscience, CAS Center for Excellence in Brain Science and Intelligence Technology, State Key Laboratory of Neuroscience, CAS Key Laboratory of Primate Neurobiology, Chinese Academy of Sciences, Shanghai 200031, China.
Tian-Lin ChengInstitute of Neuroscience, CAS Center for Excellence in Brain Science and Intelligence Technology, State Key Laboratory of Neuroscience, CAS Key Laboratory of Primate Neurobiology, Chinese Academy of Sciences, Shanghai 200031, China.
Juhui QiuState Key Laboratory of Biomembrane and Membrane Engineering, Tsinghua-Peking Center for Life Sciences, School of Life Sciences, Tsinghua University, Beijing 100084, China.
Qing ShengCollege of Life Sciences, Zhejiang Sci-Tech University, Hangzhou, Zhejiang 310018, China.
Hai-Meng ZhouCollege of Life Sciences, Zhejiang Sci-Tech University, Hangzhou, Zhejiang 310018, China.
Zhi-Rong LvZhejiang Provincial Key Laboratory of Applied Enzymology, Yangtze Delta Region Institute of Tsinghua University, Jiaxing, Zhejiang 314006, China.
Junjun YanState Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, Hubei 430072, China.
Yongjian ZhouDepartment of Gastric Surgery, Union Hospital of Fujian Medical University, Fuzhou, Fujian 350001, China.
Zilong QiuInstitute of Neuroscience, CAS Center for Excellence in Brain Science and Intelligence Technology, State Key Laboratory of Neuroscience, CAS Key Laboratory of Primate Neurobiology, Chinese Academy of Sciences, Shanghai 200031, China.
Zongbin CuiState Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, Hubei 430072, China.
Xi ZhangInstitute of Life Sciences, Fuzhou University, Fuzhou, Fujian 350108, China.
Anming MengState Key Laboratory of Biomembrane and Membrane Engineering, Tsinghua-Peking Center for Life Sciences, School of Life Sciences, Tsinghua University, Beijing 100084, China.
Qiang SunInstitute of Neuroscience, CAS Center for Excellence in Brain Science and Intelligence Technology, State Key Laboratory of Neuroscience, CAS Key Laboratory of Primate Neurobiology, Chinese Academy of Sciences, Shanghai 200031, China.
Yufeng YangInstitute of Life Sciences, Fuzhou University, Fuzhou, Fujian 350108, China.
Fuzhou University · CNChinese Academy of Sciences · CNCenter for Life Sciences · CNZhejiang Sci-Tech University · CNFujian Medical University · CNJiaxing University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Site-specific DNA double-strand breaks have been used to generate knock-in through the homology-dependent or -independent pathway. However, low efficiency and accompanying negative impacts such as undesirable indels or tumorigenic potential remain problematic. In this study, we present an enhanced reduced-risk genome editing strategy we named as NEO, which used either site-specific trans or cis double-nicking facilitated by four bacterial recombination factors (RecOFAR). In comparison to currently available approaches, NEO achieved higher knock-in (KI) germline transmission frequency (improving from zero to up to 10% efficiency with an average of 5-fold improvement for 8 loci) and 'cleaner' knock-in of long DNA fragments (up to 5.5 kb) into a variety of genome regions in zebrafish, mice and rats. Furthermore, NEO yielded up to 50% knock-in in monkey embryos and 20% relative integration efficiency in non-dividing primary human peripheral blood lymphocytes (hPBLCs). Remarkably, both on-target and off-target indels were effectively suppressed by NEO. NEO may also be used to introduce low-risk unrestricted point mutations effectively and precisely. Therefore, by balancing efficiency with safety and quality, the NEO method reported here shows substantial potential and improves the in vivo gene-editing strategies that have recently been developed.

Indexed as

AnimalsBacterial ProteinsDNA-Binding ProteinsDNA Breaks, Double-StrandedFemaleGene EditingGene Knock-In TechniquesGenomicsHomologous RecombinationHumansINDEL MutationMacaca fascicularisMiceRats, Sprague-DawleyRec A RecombinasesZebrafishBacterial ProteinsDNA-Binding ProteinsRec A RecombinasesrecF protein, BacteriaRecR protein, Bacteria

Identifiers

PMID32232370
PMCPMC7261186
OpenAlexW3013871596

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.