Evidence map›Paper›PMID 32229499›Full record

ArticleBMJ health & care informatics2020

Extending an open-source tool to measure data quality: case report on Observational Health Data Science and Informatics (OHDSI).

Brian E Dixon, Chen Wen, Tony French, Jennifer L Williams, Jon D Duke, Shaun J Grannis

Abstract readEvaluation Study
In one paragraph

Article in BMJ health & care informatics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Centralized and Federated Models for the Analysis of Clinical Data.Annual review of biomedical data science · 2024
    Review
  6. Article
  7. Article
  8. Article
  9. Higher hospitalization and mortality rates among SARS-CoV-2-infected persons in rural America.The Journal of rural health : official journal of the American Rural Health Association and the National Rural Health Care Association · 2023
    Article
  10. Article
  11. Impact of malnutrition on clinical outcomes in patients diagnosed with COVID-19.JPEN. Journal of parenteral and enteral nutrition · 2022
    Article
  12. Article
  13. Key Contributions in Clinical Research Informatics.Yearbook of medical informatics · 2021
    Review
  14. Barriers to using clinical decision support in ambulatory care: Do clinics in health systems fare better?Journal of the American Medical Informatics Association : JAMIA · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Brian E DixonDepartment of Epidemiology, Indiana University Richard M Fairbanks School of Public Health, Indianapolis, Indiana, USA bedixon@regenstrief.org.ORCID http://orcid.org/0000-0002-1121-0607
Chen WenCenter for Biomedical Informatics, Regenstrief Institute Inc, Indianapolis, Indiana, USA.
Tony FrenchCenter for Biomedical Informatics, Regenstrief Institute Inc, Indianapolis, Indiana, USA.
Jennifer L WilliamsCenter for Biomedical Informatics, Regenstrief Institute Inc, Indianapolis, Indiana, USA.
Jon D DukeCenter for Health Analytics and Informatics, Georgia Tech Research Institute, Atlanta, Georgia, USA.
Shaun J GrannisCenter for Biomedical Informatics, Regenstrief Institute Inc, Indianapolis, Indiana, USA.

Funding

Implementing a Maternal health and PRegnancy Outcomes Vision for Everyone (IMPROVE)UL1TR002378 · NCATS · EMORY UNIVERSITY · PI Andres J Garcia, Elizabeth O. Ofili · 2017 to 2026
$92.1M
Advancing Methods to Measure and Improve the Quality of Large Scale Health DataR21LM012219 · NLM · INDIANA UNIVERSITY INDIANAPOLIS · PI DIXON, BRIAN E. · 2015 to 2016
$381k
Exploring the Utilization of and Outcomes from Health Information Exchange in Emergency SettingsR21HS025502 · AHRQ · INDIANA UNIVERSITY INDIANAPOLIS · PI DIXON, BRIAN E. · 2017 to 2018
$297k
AHRQ HHS R21 HS025502NCATS NIH HHS UL1 TR002378NLM NIH HHS R21 LM012219
6 · The paper itself

Abstract

introductionAs the health system seeks to leverage large-scale data to inform population outcomes, the informatics community is developing tools for analysing these data. To support data quality assessment within such a tool, we extended the open-source software Observational Health Data Sciences and Informatics (OHDSI) to incorporate new functions useful for population health.

methodsWe developed and tested methods to measure the completeness, timeliness and entropy of information. The new data quality methods were applied to over 100 million clinical messages received from emergency department information systems for use in public health syndromic surveillance systems. DISCUSSION: While completeness and entropy methods were implemented by the OHDSI community, timeliness was not adopted as its context did not fit with the existing OHDSI domains. The case report examines the process and reasons for acceptance and rejection of ideas proposed to an open-source community like OHDSI.

Indexed as

Data AccuracyData ScienceInformation Storage and RetrievalSoftwarePopulation Surveillanceinformation systemsmedical informaticspublic health

Identifiers

PMID32229499
PMCPMC7254131

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.