Evidence map›Paper›PMID 32229306›Full record

ArticleMolecular cell2020

TFIID Enables RNA Polymerase II Promoter-Proximal Pausing.

Charli B Fant, Cecilia B Levandowski, Kapil Gupta, Zachary L Maas, John Moir, Jonathan D Rubin, Andrew Sawyer, Meagan N Esbin, Jenna K Rimel, Olivia Luyties and 4 more

Open access · bronzeAbstract read
In one paragraph

Article in Molecular cell, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 58 papers.

0numbers the graph read from it
0cells of the map it votes in
58citing papers in PubMed
5.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

58 citing papers in PubMed, 103 citations in OpenAlex.

  1. The molecular basis of transcription initiation by RNA polymerase II.Nature reviews. Molecular cell biology · 2026
    Review
  2. Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 2 countries.

Charli B FantDepartment of Biochemistry, University of Colorado, Boulder, CO, USA.
Cecilia B LevandowskiDepartment of Biochemistry, University of Colorado, Boulder, CO, USA.
Kapil GuptaSchool of Biochemistry, Bristol Research Centre for Synthetic Biology, University of Bristol, Bristol, UK.
Zachary L MaasDepartment of Biochemistry, University of Colorado, Boulder, CO, USA.
John MoirDepartment of Biochemistry, University of Colorado, Boulder, CO, USA.
Jonathan D RubinDepartment of Biochemistry, University of Colorado, Boulder, CO, USA.
Andrew SawyerDepartment of Biology, Brandeis University, Waltham, MA, USA.
Meagan N EsbinDepartment of Biochemistry, University of Colorado, Boulder, CO, USA.
Jenna K RimelDepartment of Biochemistry, University of Colorado, Boulder, CO, USA.
Olivia LuytiesDepartment of Biochemistry, University of Colorado, Boulder, CO, USA.
Michael T MarrDepartment of Biology, Brandeis University, Waltham, MA, USA.
Imre BergerSchool of Biochemistry, Bristol Research Centre for Synthetic Biology, University of Bristol, Bristol, UK.
Robin D DowellDepartment of Molecular, Cellular, and Developmental Biology, University of Colorado, Boulder, CO, USA; BioFrontiers Institute, University of Colorado, Boulder, CO, USA.
Dylan J TaatjesDepartment of Biochemistry, University of Colorado, Boulder, CO, USA. Electronic address: taatjes@colorado.edu.
University of Colorado Boulder · USBrandeis University · USUniversity of Bristol · GB

Funding

TRAINING IN SIGNAL TRANSDUCTION &CELL CYCLE REGULATIONT32GM008759 · NIGMS · UNIVERSITY OF COLORADO AT BOULDER · PI AHN, NATALIE G. · 2000 to 2020
$5.9M
Quantitative Biology: a Graduate Curriculum Linking the Physical and Biomedical ST32EB009419 · NIBIB · BRANDEIS UNIVERSITY · PI GELLES, JEFF, KONDEV, JANE · 2009 to 2018
$2.8M
TFIIH and Transcription RegulationR01GM110064 · NIGMS · UNIVERSITY OF COLORADO · PI RANISH, JEFFREY A, TAATJES, DYLAN J · 2016 to 2019
$2.2M
A High-memory Supercomputer for Proteomics, Text Mining and Microbiome ResearchS10OD012300 · OD · UNIVERSITY OF COLORADO · PI AHN, NATALIE G. · 2013 to 2013
$1.9M
A Technique for Measuring Transcription Factor ActivityR01GM125871 · NIGMS · UNIVERSITY OF COLORADO · PI DOWELL-DEEN, ROBIN DEANNE · 2018 to 2021
$1.6M
Mediator Kinases and Transcription RegulationR01GM117370 · NIGMS · UNIVERSITY OF COLORADO · PI TAATJES, DYLAN J · 2016 to 2019
$1.5M
NIBIB NIH HHS T32 EB009419NIGMS NIH HHS R01 GM110064NIGMS NIH HHS R01 GM117370NIGMS NIH HHS R01 GM125871NIGMS NIH HHS T32 GM008759NIH HHS S10 OD012300Wellcome TrustWellcome Trust 106115/Z/14/Z
6 · The paper itself

Abstract

RNA polymerase II (RNAPII) transcription is governed by the pre-initiation complex (PIC), which contains TFIIA, TFIIB, TFIID, TFIIE, TFIIF, TFIIH, RNAPII, and Mediator. After initiation, RNAPII enzymes pause after transcribing less than 100 bases; precisely how RNAPII pausing is enforced and regulated remains unclear. To address specific mechanistic questions, we reconstituted human RNAPII promoter-proximal pausing in vitro, entirely with purified factors (no extracts). As expected, NELF and DSIF increased pausing, and P-TEFb promoted pause release. Unexpectedly, the PIC alone was sufficient to reconstitute pausing, suggesting RNAPII pausing is an inherent PIC function. In agreement, pausing was lost upon replacement of the TFIID complex with TATA-binding protein (TBP), and PRO-seq experiments revealed widespread disruption of RNAPII pausing upon acute depletion (t = 60 min) of TFIID subunits in human or Drosophila cells. These results establish a TFIID requirement for RNAPII pausing and suggest pause regulatory factors may function directly or indirectly through TFIID.

Indexed as

Promoter Regions, GeneticTranscription, GeneticAnimalsDrosophilaDrosophila ProteinsHCT116 CellsHumansProtein BindingRNA Polymerase IITranscription Factor TFIIDDrosophila ProteinsRNA Polymerase IITranscription Factor TFIIDDSIFNELFpausingPRO-seqP-TEFbRNA polymerase IITAF1TBPTFIIDTRIM-Away

Identifiers

PMID32229306
PMCPMC7245555
OpenAlexW3011916202

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.