Evidence map›Paper›PMID 32228804›Full record

ArticleMicrobial genomics2020

Defining metrics for whole-genome sequence analysis of MRSA in clinical practice.

Kathy E Raven, Beth Blane, Narender Kumar, Danielle Leek, Eugene Bragin, Francesc Coll, Julian Parkhill, Sharon J Peacock

Open access · goldAbstract read
In one paragraph

Article in Microbial genomics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.2field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 11 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Kathy E RavenDepartment of Medicine, University of Cambridge, Box 157 Addenbrooke's Hospital, Hills Road, Cambridge, CB2 0QQ, UK.
Beth BlaneDepartment of Medicine, University of Cambridge, Box 157 Addenbrooke's Hospital, Hills Road, Cambridge, CB2 0QQ, UK.
Narender KumarDepartment of Medicine, University of Cambridge, Box 157 Addenbrooke's Hospital, Hills Road, Cambridge, CB2 0QQ, UK.
Danielle LeekDepartment of Medicine, University of Cambridge, Box 157 Addenbrooke's Hospital, Hills Road, Cambridge, CB2 0QQ, UK.
Eugene BraginNext Gen Diagnostics LLC (NGD), Mountain View, CA and Wellcome Genome Campus, Hinxton, Cambridge, UK.
Francesc CollLondon School of Hygiene & Tropical Medicine, Keppel Street, London, WC1E 7HT, UK.
Julian ParkhillDepartment of Veterinary Medicine, University of Cambridge, Madingley Road, Cambridge, CB3 0ES, UK.
Sharon J PeacockDepartment of Medicine, University of Cambridge, Box 157 Addenbrooke's Hospital, Hills Road, Cambridge, CB2 0QQ, UK.
University of Cambridge · GBUniversity of London · GB

Funding

Department of HealthWellcome TrustWellcome Trust 098051Wellcome Trust 201344/Z/16/ZWellcome Trust WT098600
6 · The paper itself

Abstract

Bacterial sequencing will become increasingly adopted in routine microbiology laboratories. Here, we report the findings of a technical evaluation of almost 800 clinical methicillin-resistant

Indexed as

Bacterial ProteinsComputational BiologyHigh-Throughput Nucleotide SequencingHumansMethicillin-Resistant Staphylococcus aureusPenicillin-Binding ProteinsPolymorphism, Single NucleotideStaphylococcal InfectionsUnited KingdomWhole Genome SequencingWorkflowBacterial ProteinsmecA protein, Staphylococcus aureusPenicillin-Binding ProteinsMRSAquality metricstranslationalwhole-genome sequencing

Identifiers

PMID32228804
PMCPMC7276698
OpenAlexW3013843499

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.