Evidence map›Paper›PMID 32227272›Full record

ArticleMycorrhiza2020

Gene expression in Rhizoglomus irregulare at two different time points of mycorrhiza establishment in Helianthus annuus roots, as revealed by RNA-seq analysis.

Alberto Vangelisti, Alessandra Turrini, Cristiana Sbrana, Luciano Avio, Tommaso Giordani, Lucia Natali, Manuela Giovannetti, Andrea Cavallini

Open access · greenAbstract read
PubMed Publisher
In one paragraph

Article in Mycorrhiza, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Synergetic effect of water deficit and arbuscular mycorrhizal symbiosis on the expression of aquaporins in wheat (Physiology and molecular biology of plants : an international journal of functional plant biology · 2023
    Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Alberto VangelistiDepartment of Agriculture, Food, and Environment, University of Pisa, Pisa, Italy.
Alessandra TurriniDepartment of Agriculture, Food, and Environment, University of Pisa, Pisa, Italy. alessandra.turrini@unipi.it.ORCID https://orcid.org/0000-0002-7186-4418
Cristiana SbranaCNR, Institute of Agricultural Biology and Biotechnology UOS Pisa, Pisa, Italy.ORCID https://orcid.org/0000-0002-8058-8566
Luciano AvioDepartment of Agriculture, Food, and Environment, University of Pisa, Pisa, Italy.ORCID https://orcid.org/0000-0003-2468-3400
Tommaso GiordaniDepartment of Agriculture, Food, and Environment, University of Pisa, Pisa, Italy.
Lucia NataliDepartment of Agriculture, Food, and Environment, University of Pisa, Pisa, Italy.ORCID https://orcid.org/0000-0003-3179-5910
Manuela GiovannettiDepartment of Agriculture, Food, and Environment, University of Pisa, Pisa, Italy.ORCID https://orcid.org/0000-0002-0716-7837
Andrea CavalliniDepartment of Agriculture, Food, and Environment, University of Pisa, Pisa, Italy.
University of Pisa · ITDeleted Institution

Funding

Università di Pisa none
6 · The paper itself

Abstract

Arbuscular mycorrhizal fungi (AMF) play a fundamental role in plant growth and nutrition in natural and agricultural ecosystems. Despite the importance of such symbionts, the different developmental changes occurring during the AMF life cycle have not been fully elucidated at the molecular level. Here, the RNA-seq approach was used to investigate Rhizoglomus irregulare specific and common transcripts at two different time points of mycorrhizal establishment in Helianthus annuus in vivo. Four days after inoculation, transcripts related to cellular remodeling (actin and tubulin), cellular signaling (calmodulin, serine/threonine protein kinase, 14-3-3 protein, and calcium transporting ATPase), lipid metabolism (fatty acid desaturation, steroid hormone, and glycerophospholipid biosynthesis), and biosynthetic processes were detected. In addition to such transcripts, 16 days after inoculation, expressed genes linked to binding and catalytic activities; ion (K

Indexed as

GlomeromycotaHelianthusMycorrhizaeEcosystemPlant RootsRNA-SeqSymbiosisMycorrhizal colonization stagesRhizoglomus irregulare transcriptomeRNA-seqSunflower mycorrhizal symbiosis

Identifiers

PMID32227272
OpenAlexW3013058788

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.