ArticleFrontiers in genetics2020
PIANO: A Web Server for Pseudouridine-Site (Ψ) Identification and Functional Annotation.
Article in Frontiers in genetics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.
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Who cites it
23 citing papers in PubMed.
- RMPore: a comprehensive database of single-molecule RNA modifications detected by Nanopore direct RNA sequencing.Nucleic acids research · 2026Article
- Review
- Definer: A computational method for accurate identification of RNA pseudouridine sites based on deep learning.PloS one · 2025Article
- Bioinformatics for Inosine: Tools and Approaches to Trace This Elusive RNA Modification.Genes · 2024Review
- Interpretable Multi-Scale Deep Learning for RNA Methylation Analysis across Multiple Species.International journal of molecular sciences · 2024Article
- Shining a spotlight on m6A and the vital role of RNA modification in endometrial cancer: a review.Frontiers in genetics · 2023Review
- Predicting Pseudouridine Sites with Porpoise.Methods in molecular biology (Clifton, N.J.) · 2023Article
- RNA modifications: an overview of select web-based tools.RNA (New York, N.Y.) · 2022Review
- Dynamic regulation and key roles of ribonucleic acid methylation.Frontiers in cellular neuroscience · 2022Review
- Interferon inducible pseudouridine modification in human mRNA by quantitative nanopore profiling.Genome biology · 2021Article
- Porpoise: a new approach for accurate prediction of RNA pseudouridine sites.Briefings in bioinformatics · 2021Article
- Mapping of pseudouridine residues on cellular and viral transcripts using a novel antibody-based technique.RNA (New York, N.Y.) · 2021Article
- A Feature Fusion Predictor for RNA Pseudouridine Sites with Particle Swarm Optimizer Based Feature Selection and Ensemble Learning Approach.Current issues in molecular biology · 2021Article
- Epigenetics: Roles and therapeutic implications of non-coding RNA modifications in human cancers.Molecular therapy. Nucleic acids · 2021Review
- RMDisease: a database of genetic variants that affect RNA modifications, with implications for epitranscriptome pathogenesis.Nucleic acids research · 2021Article
- Recent advances in functional annotation and prediction of the epitranscriptome.Computational and structural biotechnology journal · 2021Review
- The Critical Contribution of Pseudouridine to mRNA COVID-19 Vaccines.Frontiers in cell and developmental biology · 2021Review
- m5UPred: A Web Server for the Prediction of RNA 5-Methyluridine Sites from Sequences.Molecular therapy. Nucleic acids · 2020Article
- Prediction of RNA Methylation Status From Gene Expression Data Using Classification and Regression Methods.Evolutionary bioinformatics online · 2020Article
- Bioinformatics approaches for deciphering the epitranscriptome: Recent progress and emerging topics.Computational and structural biotechnology journal · 2020Review
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Authors and funding
7 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Known as the "fifth RNA nucleotide", pseudouridine (Ψ or psi) is the first-discovered and most abundant RNA modification occurring at the Uridine site, and it plays a prominent role in a number of biological processes. Thousands of Ψ sites have been identified within different biological contexts thanks to the advancement in high-throughput sequencing technology; nevertheless, the transcriptome-wide distribution, biomolecular functions, regulatory mechanisms, and disease relevance of pseudouridylation are largely elusive. We report here a web server-PIANO-for
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