Evidence map›Paper›PMID 32226422›Full record

ArticleFrontiers in microbiology2020

Hiding in Plain Sight: The Globally Distributed Bacterial Candidate Phylum PAUC34f.

Michael L Chen, Eric D Becraft, Maria Pachiadaki, Julia M Brown, Jessica K Jarett, Josep M Gasol, Nikolai V Ravin, Duane P Moser, Takuro Nunoura, Gerhard J Herndl and 2 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in microbiology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Article
  3. The dynamic history of prokaryotic phyla: discovery, diversity and division.International journal of systematic and evolutionary microbiology · 2024
    Review
  4. Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 8 institutions in 7 countries.

Michael L ChenBigelow Laboratory for Ocean Sciences, East Boothbay, ME, United States.
Eric D BecraftBigelow Laboratory for Ocean Sciences, East Boothbay, ME, United States.
Maria PachiadakiBigelow Laboratory for Ocean Sciences, East Boothbay, ME, United States.
Julia M BrownBigelow Laboratory for Ocean Sciences, East Boothbay, ME, United States.
Jessica K JarettU.S. Department of Energy Joint Genome Institute, Berkeley, CA, United States.
Josep M GasolInstitut de Ciències del Mar, Consejo Superior de Investigaciones Científicas (CSIC), Barcelona, Spain.
Nikolai V RavinInstitute of Bioengineering, Research Center of Biotechnology, Russian Academy of Sciences, Moscow, Russia.
Duane P MoserDivision of Hydrologic Sciences, Desert Research Institute, Las Vegas, NV, United States.
Takuro NunouraResearch Center for Bioscience and Nanoscience (CeBN), Japan Agency for Marine-Earth Science and Technology (JAMSTEC), Yokosuka, Japan.
Gerhard J HerndlDepartment of Limnology and Bio-Oceanography, University of Vienna, Vienna, Austria.
Tanja WoykeU.S. Department of Energy Joint Genome Institute, Berkeley, CA, United States.
Ramunas StepanauskasBigelow Laboratory for Ocean Sciences, East Boothbay, ME, United States.
Bigelow Laboratory for Ocean Sciences · USJoint Genome Institute · USDesert Research Institute · USInstitut Català de Ciències del Clima · ESJapan Agency for Marine-Earth Science and Technology · JPRoyal Netherlands Institute for Sea Research · NLRussian Academy of Sciences · RUWilliams College · US

Funding

Austrian Science Fund FWF P 28781European Research Council 268595
6 · The paper itself

Abstract

Bacterial candidate phylum PAUC34f was originally discovered in marine sponges and is widely considered to be composed of sponge symbionts. Here, we report 21 single amplified genomes (SAGs) of PAUC34f from a variety of environments, including the dark ocean, lake sediments, and a terrestrial aquifer. The diverse origins of the SAGs and the results of metagenome fragment recruitment suggest that some PAUC34f lineages represent relatively abundant, free-living cells in environments other than sponge microbiomes, including the deep ocean. Both phylogenetic and biogeographic patterns, as well as genome content analyses suggest that PAUC34f associations with hosts evolved independently multiple times, while free-living lineages of PAUC34f are distinct and relatively abundant in a wide range of environments.

Indexed as

dark oceanhost-associationmicrobial ecologymicrobial genomicsuncultivated bacteria

Identifiers

PMID32226422
PMCPMC7081726
OpenAlexW3012349005

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.